Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00066 ATGGAGCTCCCAGTTTTGGCAACTGTATTTCTCCTCAGCTTATTCTGCACAAAAGTTAGCCTAGTTTTTGGAGACATTGGTACTGCCTCAGTTTATAATCCGCCATATTTACCTACAGAGTGTTTCGGAAGCAGACAAGATCAATTCCCTTCCGGAAATTTTTTTGTTGCAGTCGGCGAAGGATTGTGGGATAATGGGGCGGCCTGTGGGAGAAGATACAGAATAAGGTGTTTAAGTGGTAAAAGTAAACCATGCAAAGATGGTTATATAGAGGTTGTGGTGGTCAATTTATGTCCAAAATCACCATGTCCATCTACCCTTTTCATGTCAAAGGATGCCTTTGCTGCCATTTCACACATCCATAACACAAGAGTCAATGTCGAATTTATGCCGTAA 396 41.67 MELPVLATVFLLSLFCTKVSLVFGDIGTASVYNPPYLPTECFGSRQDQFPSGNFFVAVGEGLWDNGAACGRRYRIRCLSGKSKPCKDGYIEVVVVNLCPKSPCPSTLFMSKDAFAAISHIHNTRVNVEFMP 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 723981 724559 + Bda016002.1 Bda03g00066 3325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00066 131 Gene3D - 25 130 IPR036908 -
Bda03g00066 131 SMART dpbb_1 56 129 IPR007112 -
Bda03g00066 131 PANTHER RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATED 6 130 - -
Bda03g00066 131 SUPERFAMILY Barwin-like endoglucanases 13 129 IPR036908 -
Bda03g00066 131 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 131 IPR007112 -
Bda03g00066 131 Pfam Lytic transglycolase 60 129 IPR009009 -
Bda03g00066 131 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 6 130 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00066 - - - oeu:111387510 183.726
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00739 Bda03g00066 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01866 Bda-Chr1:54760089 Bda03g00066 Bda-Chr3:723981 1.10E-27 dispersed
Bda03g00066 Bda-Chr3:723981 Bda11g00122 Bda-Chr11:1675436 3.35E-19 dispersed
Bda01g00739 Bda-Chr1:34676832 Bda03g00066 Bda-Chr3:723981 2.18E-82 wgd
Bda01g00988 Bda-Chr1:43472588 Bda03g00066 Bda-Chr3:723981 1.06E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g462 Blo01g01381 . Bda01g00739 Bda03g00066 . . . . Cmo05g00387 . . Cma05g00388 . . Sed01g1369 . . Bhi04g00975 Tan02g2713 Cmetu03g1797 . Hepe10g0261 . Lcy13g1780 . . . . . . . . . . . . . . Cme03g01622 . . . . . . . . . . . . . . Car05g00329 Cpe11g00332 . . . . . . . . Cla08g01325 Cam08g1787 Cec08g1365 Cco08g1493 Clacu08g1481 . Cre08g1270 . . Chy03g01129 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007057 2 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 0 2 1 1 1 1 2 1 1 1 1 2 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00066 Bda_Chr03 FPKM 31.423277 30.251291 1.420143 1.064804 0.0 0.0 0.0 0.264671 0.223779