Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00068 | ATGGGAGAGATGAAGGATAACGAGTATGAGGAAGAGTTCGTCGACTACGAAGAAGAAGAAGACAGGGTTCCCGACTCTGATGGAGCTAAAGTCAATGGCGAAGCGGGCAAGAAGGGCTATGTTGGGATTCATAGTTCGGGATTTAGAGACTTCCTTTTGAAGCCAGAACTTCTTCGTGCTATTGTGGATTCTGGATTTGAGCATCCTTCTGAAGGCAATTTCCTACTTTTTTCTGTGAAACTAGAGTTTTTATCCATCAATTTGCAGTTTCTTTTTCAACACGAATGTATTCCTCAAGCCATCCTGGGCATGGATGTTATTTGTCAAGCAAAATCTGGAATGGGCAAAACTGCTGTTTTTGTTCTTTCATCTCTGCAACAAATTGATCCTGTACCAGGTCAAGTTTCTGCACTTGTTCTGTGTCATACAAGGGAGTTGGCGTATCAGATCTGTCATGAGTTTGAAAGGTTCAGCACGTACCTGGTCGATCTTAAGGTTGCTGTCTTCTACGGTGGCGTCAGTATCAAAATTCACAAGGATTTGCTAAAGAATGAATGCCCACATATTGTTGTTGGAACACCGGGAAGAATATTGGCACTGGCAAGAGATAAGGATCTTTCTTTAAAGAATGTTAGGCATTTTATCCTGGATGAGTGTGACAAAATGCTCGAGTCCCTTGACATGAGAAGAGATGTTCAGGAAATTTTTAAAATGACTCCTCATGATAAACAAGTGATGATGTTTTCTGCCACCCTCAGCAAAGAGATCCGTCCAGTTTGTCAGAAGTTTATGCAAGATCCAATGGAAATTTATGTTGACGATGAGGCAAAGTTGACCTTGCATGGTCTTGTGCAGCACTACATCAAATTAACGGAGTCAGAGAAAAATCGCAAGTTGAATGATCTCCTTGATGCATTGGACTTTAATCAAGTCGTTATTTTTGTCAAAAGTGTAAGCAGAGCTGCCGAGCTGGATAAATTGCTTGTGGAGTGTAATTTCCCTTCTATATGCATCCATTCCGGCATGCCCCAGGAAGAAAGGCTGACACGATACAAAGGTTTTAAGGAGGGGCATAAGAGGATTCTTGTTGCGACAGATTTGGTTGGTAGAGGTATTGATATTGAGCGTGTCAACATTGTCATCAACTATGACATGCCAGATTCTGCTGATACTTACCTGCATAGGGTTGGGAGGGCTGGTAGGTTTGGTACCAAAGGCCTAGCGATAACATTCGTGTCATCTGCTGCTGATTCTGCTATTCTCAATAATGTTCAAGAAAGGTTTGACGCTGATATCCAGGTCCTCCCTGAGCAGATTGATACCTCTACATACAGTAAGTTGTATTAA | 1347 | 42.02 | MGEMKDNEYEEEFVDYEEEEDRVPDSDGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGNFLLFSVKLEFLSINLQFLFQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLVDLKVAVFYGGVSIKIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSAILNNVQERFDADIQVLPEQIDTSTYSKLY | 448 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 735133 | 738323 | - | Bda016004.1 | Bda03g00068 | 3327 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00068 | 448 | CDD | DEADc_DDX39 | 45 | 272 | - | - | |
Bda03g00068 | 448 | Pfam | Helicase conserved C-terminal domain | 296 | 403 | IPR001650 | - | |
Bda03g00068 | 448 | SMART | helicmild6 | 322 | 403 | IPR001650 | - | |
Bda03g00068 | 448 | Gene3D | - | 42 | 278 | IPR027417 | - | |
Bda03g00068 | 448 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 97 | 270 | IPR014001 | - | |
Bda03g00068 | 448 | SMART | ultradead3 | 84 | 286 | IPR014001 | - | |
Bda03g00068 | 448 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 443 | IPR001650 | - | |
Bda03g00068 | 448 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 27 | 442 | - | - | |
Bda03g00068 | 448 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 135 | 414 | IPR027417 | - | |
Bda03g00068 | 448 | Pfam | DEAD/DEAH box helicase | 92 | 256 | IPR011545 | GO:0003676|GO:0005524 | |
Bda03g00068 | 448 | Gene3D | - | 279 | 446 | IPR027417 | - | |
Bda03g00068 | 448 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Bda03g00068 | 448 | CDD | SF2_C_DEAD | 283 | 412 | - | - | |
Bda03g00068 | 448 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 | 27 | 442 | - | - | |
Bda03g00068 | 448 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda03g00068 | Bda13g01265 | CCT | |
Bda01g00999 | Bda03g00068 | CCT | |
Bda03g00068 | Bda13g01265 | ECH | |
Bda01g00999 | Bda03g00068 | ECH | |
Bda01g00741 | Bda03g00068 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00068 | Bda-Chr3:735133 | Bda13g00354 | Bda-Chr13:4397992 | 3.87E-73 | dispersed | |
Bda01g00741 | Bda-Chr1:34683729 | Bda03g00068 | Bda-Chr3:735133 | 0 | wgd | |
Bda01g00999 | Bda-Chr1:43582058 | Bda03g00068 | Bda-Chr3:735133 | 0 | wgd | |
Bda13g01265 | Bda-Chr13:35043466 | Bda03g00068 | Bda-Chr3:735133 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00068 | K12812 | - | csv:101217346 | 779.245 |