Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00068 ATGGGAGAGATGAAGGATAACGAGTATGAGGAAGAGTTCGTCGACTACGAAGAAGAAGAAGACAGGGTTCCCGACTCTGATGGAGCTAAAGTCAATGGCGAAGCGGGCAAGAAGGGCTATGTTGGGATTCATAGTTCGGGATTTAGAGACTTCCTTTTGAAGCCAGAACTTCTTCGTGCTATTGTGGATTCTGGATTTGAGCATCCTTCTGAAGGCAATTTCCTACTTTTTTCTGTGAAACTAGAGTTTTTATCCATCAATTTGCAGTTTCTTTTTCAACACGAATGTATTCCTCAAGCCATCCTGGGCATGGATGTTATTTGTCAAGCAAAATCTGGAATGGGCAAAACTGCTGTTTTTGTTCTTTCATCTCTGCAACAAATTGATCCTGTACCAGGTCAAGTTTCTGCACTTGTTCTGTGTCATACAAGGGAGTTGGCGTATCAGATCTGTCATGAGTTTGAAAGGTTCAGCACGTACCTGGTCGATCTTAAGGTTGCTGTCTTCTACGGTGGCGTCAGTATCAAAATTCACAAGGATTTGCTAAAGAATGAATGCCCACATATTGTTGTTGGAACACCGGGAAGAATATTGGCACTGGCAAGAGATAAGGATCTTTCTTTAAAGAATGTTAGGCATTTTATCCTGGATGAGTGTGACAAAATGCTCGAGTCCCTTGACATGAGAAGAGATGTTCAGGAAATTTTTAAAATGACTCCTCATGATAAACAAGTGATGATGTTTTCTGCCACCCTCAGCAAAGAGATCCGTCCAGTTTGTCAGAAGTTTATGCAAGATCCAATGGAAATTTATGTTGACGATGAGGCAAAGTTGACCTTGCATGGTCTTGTGCAGCACTACATCAAATTAACGGAGTCAGAGAAAAATCGCAAGTTGAATGATCTCCTTGATGCATTGGACTTTAATCAAGTCGTTATTTTTGTCAAAAGTGTAAGCAGAGCTGCCGAGCTGGATAAATTGCTTGTGGAGTGTAATTTCCCTTCTATATGCATCCATTCCGGCATGCCCCAGGAAGAAAGGCTGACACGATACAAAGGTTTTAAGGAGGGGCATAAGAGGATTCTTGTTGCGACAGATTTGGTTGGTAGAGGTATTGATATTGAGCGTGTCAACATTGTCATCAACTATGACATGCCAGATTCTGCTGATACTTACCTGCATAGGGTTGGGAGGGCTGGTAGGTTTGGTACCAAAGGCCTAGCGATAACATTCGTGTCATCTGCTGCTGATTCTGCTATTCTCAATAATGTTCAAGAAAGGTTTGACGCTGATATCCAGGTCCTCCCTGAGCAGATTGATACCTCTACATACAGTAAGTTGTATTAA 1347 42.02 MGEMKDNEYEEEFVDYEEEEDRVPDSDGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGNFLLFSVKLEFLSINLQFLFQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLVDLKVAVFYGGVSIKIHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSAILNNVQERFDADIQVLPEQIDTSTYSKLY 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 735133 738323 - Bda016004.1 Bda03g00068 3327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00068 448 CDD DEADc_DDX39 45 272 - -
Bda03g00068 448 Pfam Helicase conserved C-terminal domain 296 403 IPR001650 -
Bda03g00068 448 SMART helicmild6 322 403 IPR001650 -
Bda03g00068 448 Gene3D - 42 278 IPR027417 -
Bda03g00068 448 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 270 IPR014001 -
Bda03g00068 448 SMART ultradead3 84 286 IPR014001 -
Bda03g00068 448 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 443 IPR001650 -
Bda03g00068 448 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 442 - -
Bda03g00068 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 414 IPR027417 -
Bda03g00068 448 Pfam DEAD/DEAH box helicase 92 256 IPR011545 GO:0003676|GO:0005524
Bda03g00068 448 Gene3D - 279 446 IPR027417 -
Bda03g00068 448 MobiDBLite consensus disorder prediction 1 22 - -
Bda03g00068 448 CDD SF2_C_DEAD 283 412 - -
Bda03g00068 448 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 27 442 - -
Bda03g00068 448 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00068 Bda13g01265 CCT
Bda01g00999 Bda03g00068 CCT
Bda03g00068 Bda13g01265 ECH
Bda01g00999 Bda03g00068 ECH
Bda01g00741 Bda03g00068 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00068 Bda-Chr3:735133 Bda13g00354 Bda-Chr13:4397992 3.87E-73 dispersed
Bda01g00741 Bda-Chr1:34683729 Bda03g00068 Bda-Chr3:735133 0 wgd
Bda01g00999 Bda-Chr1:43582058 Bda03g00068 Bda-Chr3:735133 0 wgd
Bda13g01265 Bda-Chr13:35043466 Bda03g00068 Bda-Chr3:735133 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00068 K12812 - csv:101217346 779.245