Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00069 ATGGTACAATTGAGGAAGTTCAGAGGTGTCAGGCAGCGGCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCGTTACTGAAGAGAAGGATATGGCTGGGGACGTTTGAGACAGCAGAGGCGGCTGCTCGGGCATATGACCAAGCAGCCATATTGATGAACGGCCAAAATGCCAAGACCAATTTTCCTAACTCAAGCAATCAAGTTGAAGACTCGAAGAACGGGGATGGATATCCATTGTCACCAAAGGAACTTTCAGAGCTTCTAAGCACGAAGCTAAAAAAATGCTGCAAAGACCCATCTCCTTCTCTCACATGCTTGAGGCTCGACAGCGATAATTCTCACATCGGAGTGTGGCAGAAGCGAGCTGGGACCCGTACAGGCTCCAACTGGGTCATGAGGATCGAGATTGGGAAGAAAAGTTTAAATCATTCAGAGATTGAGGCGCCATTATCTACCGGGGAAACGAAGAGAGGAACGATCAAAGGGGAAAACGAAATGGAGGAAGAGGATAGAATTGCAATGCAAATGATCGAGGAGTTGCTTAACTGGAACAGTCCAGAAGAGTAG 570 48.42 MVQLRKFRGVRQRQWGSWVSEIRHPLLKRRIWLGTFETAEAAARAYDQAAILMNGQNAKTNFPNSSNQVEDSKNGDGYPLSPKELSELLSTKLKKCCKDPSPSLTCLRLDSDNSHIGVWQKRAGTRTGSNWVMRIEIGKKSLNHSEIEAPLSTGETKRGTIKGENEMEEEDRIAMQMIEELLNWNSPEE 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 741933 742669 - Bda016005.1 Bda03g00069 3328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00069 189 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Bda03g00069 189 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bda03g00069 189 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Bda03g00069 189 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Bda03g00069 189 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bda03g00069 189 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bda03g00069 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 187 - -
Bda03g00069 189 MobiDBLite consensus disorder prediction 59 74 - -
Bda03g00069 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 187 - -
Bda03g00069 189 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Bda03g00069 189 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bda03g00069 189 MobiDBLite consensus disorder prediction 59 81 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00744 Bda03g00069 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00069 Bda-Chr3:741933 Bda11g00143 Bda-Chr11:1883290 5.21E-76 dispersed
Bda01g00744 Bda-Chr1:34698262 Bda03g00069 Bda-Chr3:741933 7.88E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15601 PF00847 AP2 3.40E-12 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00069 - - mcha:111006480 257.684