Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00072 ATGTCGATCCGTAAAGCGATCGGGGCTGTAAAGGACCAAACGAGCATTGGGATTGCTAAGGTCGCGAGCAATTTGGCTCCGGAGCTCGAGGTAGCAATAGTCAAGGCCACTAGTCACGACGATGATCCAGCCAGCGAGAAGTATGTGAGGGAAATTTTGAACTTGACATCATGCTCTCGTGGGTACGTGAACGCTTGTGTGTCACTCGTGTCCAAGCGTCTGAGCAAGACGAGGGATTGGGTCGTGGCTCTCAAGGCACTCGTGCTTGTCCACAGGCTATTGAACGAAGGAGACCCGTTTCTTCAGGAAGAGATTTTGTATGGTACAAGGAGGGGTACAAGGCTGTTGAACATGTCTGATTTTAAGGACGAGGCTCATTCGAGCAGCTGGGATCACTCCGCTTTTGTCCGCACTTATGCCATGTATTTGGATCAAAGGCTCGAATTGATGCTCTTCGAGAAGAAAAGTAGTAGTTCAAGAGGAAACTTTGGTGGAGACGAGAGGCTGGAATCAACCAGAGACAATTTCAGGTCACCGCCGTCGAGGTCTTATGATTATGATTTCAGCGATTCTAGGGGGGGGATGAGGAGGTCGAGGTCTTATGGAGATATGAATGAAACTGCAGGGAGAGAAGGAGGCGTGGAGAGGAAGTATGTGACCCCATTGAGGGAAATGACTCCTGAGAGGATTTTTGGAAAGATGGGTCATTTGCAGAGGCTTTTGGATAGGTGTTTGTCATGTCGGCCGACAGGGTTGGCAAAAAATAGCAGGATGATTTTGATTGCCTTGTATCCCGTGGTGAAAGAGAGCTTTCAGTTGTATGCAGATATCTGTGATGTATTGGCTGTTCTGCTCGATAAATTCTTTGATATGGAATACCATGACTGTGTTAAAGCATTTGATGCCTATGCTGGTGCAGCTAAGCAGATCGATGAGCTTATTACTTTCTACAATTGGTGTAGAGATACAGGCGTAGCTAGGTCCTCAGAGTACCCGGAGGTGCAGAGAATAACCAGTAAGCTATTAGAAACATTGGAGGAGTTTTTGAGGGATAGAGCAAAGAGGCCTAAAAGTCCGGAGAGAAAGGCTGAAACACAAGCAGGTAGTCAAGATGAAGAGCCAGTGCCTGATATGAATGAAATAAAAGCTCTACCTCCACCTGAAAACTATACTCCACCACCCCCACCGGCGGAGCCCGAGCCTAAGCCTAAGCCTCAACCACAAATCACGGAAGACCTTGTTAATCTGAGAGAAGATGCTGTCACTGCAGATGATCAGGGTAATAAATTGGCTCTGGCTTTGTTTGCTGCTCCACCTGCTAATGCCACAAATGGGGCATGGGAAGCCTTTCCAGCAAATGGAAAGCCAGAAGTGACCTCGGCCTGGCAGACCCCAGCTGCTGAGCCTGGCAAGGAAGATTGGGAGCTAGCTTTGGTGGAGACTGCAAGCAATTTAGCAAAGCAGAAAGCCACGCTTGGTGGTGGGTTTGATCCATTACTGTTGAACGGAATGTACGATCAAGGAATGGTGAGGCAACATATGAGCACAGCCCAACTGAGCGGTGGAAGCTCTAGTAGTGTTGTTCTGCCAGGCCTTGGAAAGGGAACAAGCCAAGTTCTGGCTCTACCTGCCCCAGACGGAACAGTTCAGACGGTCAATCAGGATCCCTTTGCTGCATCGTTATACATTCCACCTCCTTCTTACGTGCAAATGGCTGATATGGAGAAGAAACAGCACTTAGTAGTTCAAGAGCAGCAAGTATGGCAGCAATACGCAAGGGACGGAATGCAAGGCCAAGGTAGTTTTGCCAAGATTAGTGATGGAGGCTACTATGCAGCGGGGCCTTCCCCTATGATGCCTTATGGAATGCCAATGCCTCCTGTAAACGGAATGGGATCAGCACCTGCTGGGTATTACTATACTCCTTACTGA 1932 48.5 MSIRKAIGAVKDQTSIGIAKVASNLAPELEVAIVKATSHDDDPASEKYVREILNLTSCSRGYVNACVSLVSKRLSKTRDWVVALKALVLVHRLLNEGDPFLQEEILYGTRRGTRLLNMSDFKDEAHSSSWDHSAFVRTYAMYLDQRLELMLFEKKSSSSRGNFGGDERLESTRDNFRSPPSRSYDYDFSDSRGGMRRSRSYGDMNETAGREGGVERKYVTPLREMTPERIFGKMGHLQRLLDRCLSCRPTGLAKNSRMILIALYPVVKESFQLYADICDVLAVLLDKFFDMEYHDCVKAFDAYAGAAKQIDELITFYNWCRDTGVARSSEYPEVQRITSKLLETLEEFLRDRAKRPKSPERKAETQAGSQDEEPVPDMNEIKALPPPENYTPPPPPAEPEPKPKPQPQITEDLVNLREDAVTADDQGNKLALALFAAPPANATNGAWEAFPANGKPEVTSAWQTPAAEPGKEDWELALVETASNLAKQKATLGGGFDPLLLNGMYDQGMVRQHMSTAQLSGGSSSSVVLPGLGKGTSQVLALPAPDGTVQTVNQDPFAASLYIPPPSYVQMADMEKKQHLVVQEQQVWQQYARDGMQGQGSFAKISDGGYYAAGPSPMMPYGMPMPPVNGMGSAPAGYYYTPY 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 766133 768064 - Bda016009.1 Bda03g00072 3331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00072 643 SMART enth_2 27 157 IPR013809 -
Bda03g00072 643 Gene3D - 1 152 IPR008942 -
Bda03g00072 643 MobiDBLite consensus disorder prediction 350 408 - -
Bda03g00072 643 MobiDBLite consensus disorder prediction 157 209 - -
Bda03g00072 643 CDD ANTH_N_AP180_plant 29 149 - -
Bda03g00072 643 ProSiteProfiles ENTH domain profile. 21 157 IPR013809 -
Bda03g00072 643 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 616 IPR045192 GO:0048268|GO:0072583
Bda03g00072 643 MobiDBLite consensus disorder prediction 350 368 - -
Bda03g00072 643 Pfam ANTH domain 28 351 IPR011417 GO:0005543
Bda03g00072 643 SUPERFAMILY ENTH/VHS domain 27 148 IPR008942 -
Bda03g00072 643 PANTHER - 1 616 - -
Bda03g00072 643 Gene3D ANTH domain 214 362 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Bda03g00072 643 SUPERFAMILY GAT-like domain 221 351 - -
Bda03g00072 643 MobiDBLite consensus disorder prediction 386 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00072 - - - tcc:18587782 952.199
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00072 Bda13g01259 CCT
Bda01g00749 Bda03g00072 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00072 Bda-Chr3:766133 Bda09g01023 Bda-Chr9:40284151 0 dispersed
Bda07g01733 Bda-Chr7:32460841 Bda03g00072 Bda-Chr3:766133 4.83E-27 transposed
Bda11g00195 Bda-Chr11:2480877 Bda03g00072 Bda-Chr3:766133 2.53E-33 transposed
Bda14g01408 Bda-Chr14:17592139 Bda03g00072 Bda-Chr3:766133 4.05E-76 transposed
Bda01g00749 Bda-Chr1:34725722 Bda03g00072 Bda-Chr3:766133 0 wgd
Bda13g01259 Bda-Chr13:35021609 Bda03g00072 Bda-Chr3:766133 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g489 Blo01g01391 Blo12g01075 Bda01g00749 Bda03g00072 Bpe02g01249 Bpe02g00559 Bma04g00069 . . . . . . . . . Cpe06g00339 . . . . . . . Cla05g01735 Cam05g1849 Cec05g1861 Cco05g1921 Clacu05g1837 Cmu05g1720 Cre05g1851 . . . . Lsi04g02125 Csa03g04333 . . Blo17g00018 Blo18g00021 . Bda13g01259 Bpe14g00582 Bpe04g00057 Bma01g01275 Bma02g00022 Sed05g1706 . Cmo09g00466 Cma09g00455 . . . . . Bhi09g02235 Tan01g3643 Cmetu04g0392 . Hepe01g2019 Mch11g0554 . . . . . . . . . . . Cme04g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00072 Bda_Chr03 FPKM 31.014587 32.084961 34.600212 35.256802 33.235081 32.210812 32.545879 25.274349 24.315247