Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00076 ATGAAGAAGGTTTGTTGGCCCTACTTTGATCCTGAATATGATAGCCTCTCGGAGAGGATATATGGACCCACATGCAGAGTCTGCATTGACAACGAAAGCATGCAAGAATGCACCATAGTAAAGGTGGATAGTGTGAATAAGCAAGGTCTCCTCCTCGAAGTGGTTCAGGTTCTGACAGATTTGAATCTCACGATTTCAAAAAGCTACATTTCTTCTGATGCAGGATGGTTCATGGATGGTAGGAAATGGAATCCCTTAATTTCTCTGCTCCTTAGATTGATCTCCTGGCCTAACACTAAATCATATACCACAGTTTTTCACTGTAAAGACAAGAATGGCAACAAGCTTACGGATCAGAAGATCATTGACCACATTAAGCTGGCTATAGGAACTACCACGGGGTCAGAAAATAGGTTCATGAAGGCTAAGAACAACGCTGATAAAGAGATTTACAGACCTGAGCAGACGGCCATTGAAATGACTGGCACAGACAGGCCTGGTTTATTTTCAGAGATATCGGCAGCTCTAACCGACCTCCATTGCAACGTTGTCGAAGCTCACGCATGGAGCCACAACGCTCGCTTAGCCTGCGTCGCTTATATTTCCGACCAATCAACGGACACCCCCATCGCAGACCCTCAACGGCTGGCCACCATTGAAGACCACCTCACCACGGTGTTGAAAGCTGACGCTGCTCCGATTCCGACCACGACGCAGACCCACAGACAAGGAAAGAAAACCTCGACCACCCAGGTTGAACGGCGGCTGCACCAGCTCATGCTGTCTGTCGGGGACTTCGACGGGCCGATGAGAAGATCGGAAGTTTTGAAGGAGAGGACAGCGAAAGTGGAAATCGATAGTTGGGAAGAGAAGGGTTATTGGGTAGTGAGCATTGAGTGCAAAGACAGAGCAAGGCTGATGTTCGATACAGTGTGCACGCTGACTGATATGCAATACTCCATTTTTCATGCTTCCATTAGTTCTCATGGAGATTACGCCTTCCAGGAGTATTTCATCAGACACATGAATGGATACACCAGGGACACAGAGAGTGAGAAGAAAAGGGTGATAAAATGCTTAGAGGCAGCAATAGAGAGAAGGGTTTGCGAGGGAGTGAGGATGGAGTTGTGTGCAAACAACAGGGTGGGATTGCTATCAGACATAACTAGGGTCCTACGAGAGAACGGGCTGGCTGTCGATCGGGCGGACGTGGAGACACAGGGAGAGAAGGCTATACACGCTTTCTACGCAAAAACGGTGGCTGCATTTGCGAGGATGACAGTGCAAGATTCGAGAAAAATTCTCCCGCCAGAGTTTTATCCATCCTGGGTTGTTTTCACCCAGCGACAAAAGAATGATTCATTGCAGTTATCTTGGCTGAATCTCCAACTTGACAAGATTTGGCCCTACGTTGATCAGGCAGCGTCCGAGCTTATAAGAAGCAATGTGGAACCAATTCTTGAACAATACAGACCTGGTGTCCTGTCGTCTCTAAAGTTCTCCAAGTTCACCCTGGGTACTGTGGCTCCACAGTTTACAGGAGCTTGCATTGTTGAGGATGAAACAGATGCCGGAGGAGTTACCTTGGAATTGGAGATGCAGTGGGATGGCAACCCCAGTATAATACTTGACATAAAAACCAAATTAGGAGTGGGACTTCCTGTACAGGTAAAAGACATTGGATTCACAGGTGTTTTCAGGTTAATCTTCAAGCCTCTAGTTGAAGAGTTGCCTTGTTTTGGAGCTGTTTCTTATTCATTGAGAGAAAAGAAAAAGCTGGATTTTACTCTCAAAGTTGTTGGTGGAGATATATCAGCAATCCCAGGGATTTCTGATGCTATTGAGGAGACAATTCGTGATGCCATTGAAGATAGCATAACATGGCCAGTCAGGAAAATTGTGCCAATATTACCCGGAGATTACAGTGATCTAGAGCTGAAGACCGCTGGAACATTGCAAGTGAAGCTACTGCAAGCCAAGGACCTCACAAACAAAGATCTTATTGGAAAGTCAGATCCTTTTGCTGTTTTATTTGTGCGGCCACTGCGCGACAGAATGAAAACCAGTAAAACTATTAACAATCAGTTGAATCCAATATGGAATGAACACTTTGAGTTTACTGTAGAAGATGCAGCCACTCAACACTTGACCGTGAGAATATTTGACGATGAGGGAATTCAAGCTTCTGAGTTAATCGGCTGCGTTCAATTCTCACTGAGAGACCTTGAACCCGGAAAAGTGAAGGACGTGTGGCTGAAGCTGGTCAAAGACTTGGAGGTTCATTTGGAGCTACTATACTCGCCTATTGGCTCAAAGAGTAGCTATACAATTCCATATAATCCGAATTTGCTAACATCAGTGGAAAAGAAAATGGAAGGCAGCAATAACGAGACGATGGATCGAGGAAAGCCTTCTTCTCCGAAAAAGAGGGATGTGATTGTGAGAGGAGTGTTATCAGTGACAGTAATAGCAGCTGAAGAACTAGCAGCGGTAGATTTCATGGGAAAGGCTGACCCCTACGTTGTCCTTCTAATGAAGAAGAGTGAGACAAAAGTCAAAACAAGGGTAGTACACGACACACTCAATCCGGTCTGGAACCAGACATTCGACTTTGTAGTGGAAGATGCAATGCATGAAATGTTAATGGTGGAAGTTTGGGATCATGACACTTTCAAAAAGGGAAAACTGGGTAGAGTGATAATGTCACTTACAAGAGTGACAGTAGAAGGTGAATTTCAGGAGTGTTTTCAGCTTGACAGTGCTAAATCAGGAAGATTGTATCTCCATCTAAAGTGGACTCCACAATCAATATACACAGATTCTTGA 2826 45.08 MKKVCWPYFDPEYDSLSERIYGPTCRVCIDNESMQECTIVKVDSVNKQGLLLEVVQVLTDLNLTISKSYISSDAGWFMDGRKWNPLISLLLRLISWPNTKSYTTVFHCKDKNGNKLTDQKIIDHIKLAIGTTTGSENRFMKAKNNADKEIYRPEQTAIEMTGTDRPGLFSEISAALTDLHCNVVEAHAWSHNARLACVAYISDQSTDTPIADPQRLATIEDHLTTVLKADAAPIPTTTQTHRQGKKTSTTQVERRLHQLMLSVGDFDGPMRRSEVLKERTAKVEIDSWEEKGYWVVSIECKDRARLMFDTVCTLTDMQYSIFHASISSHGDYAFQEYFIRHMNGYTRDTESEKKRVIKCLEAAIERRVCEGVRMELCANNRVGLLSDITRVLRENGLAVDRADVETQGEKAIHAFYAKTVAAFARMTVQDSRKILPPEFYPSWVVFTQRQKNDSLQLSWLNLQLDKIWPYVDQAASELIRSNVEPILEQYRPGVLSSLKFSKFTLGTVAPQFTGACIVEDETDAGGVTLELEMQWDGNPSIILDIKTKLGVGLPVQVKDIGFTGVFRLIFKPLVEELPCFGAVSYSLREKKKLDFTLKVVGGDISAIPGISDAIEETIRDAIEDSITWPVRKIVPILPGDYSDLELKTAGTLQVKLLQAKDLTNKDLIGKSDPFAVLFVRPLRDRMKTSKTINNQLNPIWNEHFEFTVEDAATQHLTVRIFDDEGIQASELIGCVQFSLRDLEPGKVKDVWLKLVKDLEVHLELLYSPIGSKSSYTIPYNPNLLTSVEKKMEGSNNETMDRGKPSSPKKRDVIVRGVLSVTVIAAEELAAVDFMGKADPYVVLLMKKSETKVKTRVVHDTLNPVWNQTFDFVVEDAMHEMLMVEVWDHDTFKKGKLGRVIMSLTRVTVEGEFQECFQLDSAKSGRLYLHLKWTPQSIYTDS 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 796689 804034 + Bda016014.1 Bda03g00076 3335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00076 941 SUPERFAMILY ACT-like 34 79 IPR045865 -
Bda03g00076 941 ProSiteProfiles ACT domain profile. 295 371 IPR002912 -
Bda03g00076 941 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 453 637 IPR031468 GO:0008289
Bda03g00076 941 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 647 757 IPR035892 -
Bda03g00076 941 SMART C2_3c 817 915 IPR000008 -
Bda03g00076 941 SMART C2_3c 651 751 IPR000008 -
Bda03g00076 941 CDD C2 652 754 - -
Bda03g00076 941 Pfam C2 domain 816 910 IPR000008 -
Bda03g00076 941 Pfam C2 domain 650 754 IPR000008 -
Bda03g00076 941 CDD ACT_ACR_3 293 367 - -
Bda03g00076 941 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 414 940 IPR045050 GO:0008289
Bda03g00076 941 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 812 935 IPR035892 -
Bda03g00076 941 Pfam ACT domain 157 223 IPR002912 -
Bda03g00076 941 ProSiteProfiles C2 domain profile. 798 916 IPR000008 -
Bda03g00076 941 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 457 636 IPR039010 -
Bda03g00076 941 ProSiteProfiles C2 domain profile. 631 752 IPR000008 -
Bda03g00076 941 PRINTS C2 domain signature 881 889 IPR000008 -
Bda03g00076 941 PRINTS C2 domain signature 859 872 IPR000008 -
Bda03g00076 941 PRINTS C2 domain signature 833 845 IPR000008 -
Bda03g00076 941 Gene3D C2 domain 803 935 IPR035892 -
Bda03g00076 941 Gene3D C2 domain 643 768 IPR035892 -
Bda03g00076 941 Gene3D - 153 232 - -
Bda03g00076 941 PANTHER SYNAPTOTAGMIN-4 414 940 - -
Bda03g00076 941 SUPERFAMILY ACT-like 371 419 IPR045865 -
Bda03g00076 941 CDD ACT_ACR_2 156 229 - -
Bda03g00076 941 SUPERFAMILY ACT-like 153 227 IPR045865 -
Bda03g00076 941 ProSiteProfiles ACT domain profile. 157 239 IPR002912 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00076 - - - csv:101210249 826.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01960 Bda-Chr1:55993401 Bda03g00076 Bda-Chr3:796689 0 dispersed
Bda03g00076 Bda-Chr3:796689 Bda13g01544 Bda-Chr13:38665106 1.33E-130 dispersed
Bda04g00222 Bda-Chr4:8442416 Bda03g00076 Bda-Chr3:796689 2.60E-21 dispersed
Bda11g00393 Bda-Chr11:4266770 Bda03g00076 Bda-Chr3:796689 2.14E-09 dispersed
Bda15g00164 Bda-Chr15:4204190 Bda03g00076 Bda-Chr3:796689 9.09E-60 dispersed
Bda03g00076 Bda-Chr3:796689 Bda11g00063 Bda-Chr11:792074 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g502 . Blo12g01071 . Bda03g00076 . . Bma04g00073 . . . Cma01g01514 . . . . . . . . . . . . . Cla05g01724 Cam05g1837 Cec05g1851 Cco05g1908 Clacu05g1824 Cmu05g1708 Cre05g1839 Cone4ag1777 . . . Lsi04g02116 Csa03g04320 Chy04g00380 . . . . . . Bpe04g00062 . . Sed13g2012 Cmo01g01567 . . . . . . Cpe02g00442 Bhi09g02223 Tan01g3625 Cmetu04g2629 . Hepe01g2008 Mch11g0544 . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00076 Bda_Chr03 FPKM 20.203421 22.779959 15.101148 16.167072 9.923737 8.902294 10.377611 11.41261 11.332291