Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00080 | ATGGCCTACCACAACCATCTCTCCCAAGACCTTCCTCTTCACAGCTTCACAGGCCAACCGCAGCAGCTACCGGACCAAACTTTATCAGAAAATTCCTCGCGCACCATTTTGCTCGATCAGTTTATCGCTCACACTTCGCCCGACCCGACCTCCAAGTCTCACCACCACCATCACCACCAGCCACTTCAGACGGCGCCTAATTGGCTTAACAACGCACTCCTTCGCACCCAAAACCCTCACTCCCACTTCGCTACCACCACAAACAACGCCAATACCAGTTTCCTCAACCTCCATTCCACTGCATCCGATTCCCCCGCTTCTCACTCCTCCAACCAGTGGCTCTCCCGCCCCATCCTTCACCGCAACCAAAGCGACGTCATCGATGAAGCTGGGGATGCCTTAATCAGCCCATCTGCTGCAACACTATCGCCCGAATCGACTGAGTTGAATAACAATGCAAACAGCGGCGAAACTTTGAACAAGAGCGATGGGGCTCGGGTGGAAGCAAGCGGCGATGGAAGTGGGGGAGAAGGGTTTGTGAACTGGCAGAATGCGAGGTATAAGGCTGAGATTCTGGCTCATCCACTTTACGAGCAGCTTCTTTCAGCCCACGTTGCCTGTCTTCGAATTGCAACTCCCGTCGATCAGTTGCCGAGGATCGATGCACAGCTCGCTCAGTCTCAGAACGTAGTGACCAAATACTCGGCCTTGAGCCATGGTGCTCAGTCCATGGTCGGGGATGAGAAAGAGCTTGATCAGTTTATGACTCATTACGTTCTACTGCTTTGTTCCTTCAAAGATCAACTCCAACGACAAGTTCGTGTTCATGCCGTGGAAGCAGTGACGGCTTGTTGGGACATTGAGCAATCCCTTCAAAGCTTAACAGGTGATATTACATGCATATCTCATCTTTATTTGCTCAGGATTAAGCCTCGTGCATTTTGCTTCACAGGAGTATCCCCAGGTGAAGGCACAGGCGCTACAATGTCTGACGATGACGACGACCAATTAGACAGCGATGCCAATTTATTTGATGGGAGTATGGATACCATGGGATTTGGTCCTCTTGTCCCCACAGAAAGTGAGAGATCCTTAATTGAGAGGGTCAGGCAAGAACTGAAGCATGAACTAAAGACGGGTTACAAGAATAAAATCGTAGATATAAGAGAGGAAATCTTGCGGAAGAGAAGAGCCGGAAAGCTTCCGGGCGACACCACTTCGGTGTTAAAGGCATGGTGGGAATCACATGCAAAATGGCCATATCCTACGGAGGAAGACAAGGCAAGATTGGTGCAGGAAACGGGTCTTCAGATGAAGCAGATAAATAACTGGTTCATCAATCAGAGGAAGAGGAACTGGCACACTAATCCTTCAGCTTCCAAGACTAAACGCAAGAGGTTAATCTTTTTTTATACAAAACCATGGATGAACTTTCACTTCCATTATGGGTTAGCAGCCACCGACTTTCATTTTTAA | 1476 | 49.05 | MAYHNHLSQDLPLHSFTGQPQQLPDQTLSENSSRTILLDQFIAHTSPDPTSKSHHHHHHQPLQTAPNWLNNALLRTQNPHSHFATTTNNANTSFLNLHSTASDSPASHSSNQWLSRPILHRNQSDVIDEAGDALISPSAATLSPESTELNNNANSGETLNKSDGARVEASGDGSGGEGFVNWQNARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVTKYSALSHGAQSMVGDEKELDQFMTHYVLLLCSFKDQLQRQVRVHAVEAVTACWDIEQSLQSLTGDITCISHLYLLRIKPRAFCFTGVSPGEGTGATMSDDDDDQLDSDANLFDGSMDTMGFGPLVPTESERSLIERVRQELKHELKTGYKNKIVDIREEILRKRRAGKLPGDTTSVLKAWWESHAKWPYPTEEDKARLVQETGLQMKQINNWFINQRKRNWHTNPSASKTKRKRLIFFYTKPWMNFHFHYGLAATDFHF | 491 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 823750 | 826221 | - | Bda016018.1 | Bda03g00080 | 3339 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00080 | 491 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 318 | 468 | - | - | |
Bda03g00080 | 491 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Bda03g00080 | 491 | Pfam | KNOX1 domain | 187 | 228 | IPR005540 | GO:0003677|GO:0005634 | |
Bda03g00080 | 491 | ProSiteProfiles | 'Homeobox' domain profile. | 392 | 455 | IPR001356 | GO:0003677 | |
Bda03g00080 | 491 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 318 | 468 | - | - | |
Bda03g00080 | 491 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 53 | 297 | - | - | |
Bda03g00080 | 491 | ProSiteProfiles | ELK domain profile. | 372 | 392 | IPR005539 | GO:0003677 | |
Bda03g00080 | 491 | MobiDBLite | consensus disorder prediction | 10 | 30 | - | - | |
Bda03g00080 | 491 | MobiDBLite | consensus disorder prediction | 139 | 175 | - | - | |
Bda03g00080 | 491 | Gene3D | - | 393 | 454 | - | - | |
Bda03g00080 | 491 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 53 | 297 | - | - | |
Bda03g00080 | 491 | SMART | KNOX2_2 | 241 | 296 | IPR005541 | GO:0003677|GO:0005634 | |
Bda03g00080 | 491 | CDD | homeodomain | 395 | 456 | IPR001356 | GO:0003677 | |
Bda03g00080 | 491 | SUPERFAMILY | Homeodomain-like | 394 | 457 | IPR009057 | - | |
Bda03g00080 | 491 | MobiDBLite | consensus disorder prediction | 139 | 161 | - | - | |
Bda03g00080 | 491 | Pfam | Homeobox KN domain | 412 | 451 | IPR008422 | GO:0003677|GO:0006355 | |
Bda03g00080 | 491 | SMART | KNOX1_2 | 185 | 229 | IPR005540 | GO:0003677|GO:0005634 | |
Bda03g00080 | 491 | SMART | ELK_2 | 372 | 393 | IPR005539 | GO:0003677 | |
Bda03g00080 | 491 | SMART | HOX_1 | 394 | 459 | IPR001356 | GO:0003677 | |
Bda03g00080 | 491 | Pfam | KNOX2 domain | 245 | 295 | IPR005541 | GO:0003677|GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00080 | Bda-Chr3:823750 | Bda07g00506 | Bda-Chr7:6463810 | 2.08E-119 | dispersed | |
Bda01g00755 | Bda-Chr1:34791738 | Bda03g00080 | Bda-Chr3:823750 | 6.70E-171 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15603 | PF03791 | KNOX2 | 1.60E-19 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00080 | - | - | csv:101217292 | 648.277 |