Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00080 ATGGCCTACCACAACCATCTCTCCCAAGACCTTCCTCTTCACAGCTTCACAGGCCAACCGCAGCAGCTACCGGACCAAACTTTATCAGAAAATTCCTCGCGCACCATTTTGCTCGATCAGTTTATCGCTCACACTTCGCCCGACCCGACCTCCAAGTCTCACCACCACCATCACCACCAGCCACTTCAGACGGCGCCTAATTGGCTTAACAACGCACTCCTTCGCACCCAAAACCCTCACTCCCACTTCGCTACCACCACAAACAACGCCAATACCAGTTTCCTCAACCTCCATTCCACTGCATCCGATTCCCCCGCTTCTCACTCCTCCAACCAGTGGCTCTCCCGCCCCATCCTTCACCGCAACCAAAGCGACGTCATCGATGAAGCTGGGGATGCCTTAATCAGCCCATCTGCTGCAACACTATCGCCCGAATCGACTGAGTTGAATAACAATGCAAACAGCGGCGAAACTTTGAACAAGAGCGATGGGGCTCGGGTGGAAGCAAGCGGCGATGGAAGTGGGGGAGAAGGGTTTGTGAACTGGCAGAATGCGAGGTATAAGGCTGAGATTCTGGCTCATCCACTTTACGAGCAGCTTCTTTCAGCCCACGTTGCCTGTCTTCGAATTGCAACTCCCGTCGATCAGTTGCCGAGGATCGATGCACAGCTCGCTCAGTCTCAGAACGTAGTGACCAAATACTCGGCCTTGAGCCATGGTGCTCAGTCCATGGTCGGGGATGAGAAAGAGCTTGATCAGTTTATGACTCATTACGTTCTACTGCTTTGTTCCTTCAAAGATCAACTCCAACGACAAGTTCGTGTTCATGCCGTGGAAGCAGTGACGGCTTGTTGGGACATTGAGCAATCCCTTCAAAGCTTAACAGGTGATATTACATGCATATCTCATCTTTATTTGCTCAGGATTAAGCCTCGTGCATTTTGCTTCACAGGAGTATCCCCAGGTGAAGGCACAGGCGCTACAATGTCTGACGATGACGACGACCAATTAGACAGCGATGCCAATTTATTTGATGGGAGTATGGATACCATGGGATTTGGTCCTCTTGTCCCCACAGAAAGTGAGAGATCCTTAATTGAGAGGGTCAGGCAAGAACTGAAGCATGAACTAAAGACGGGTTACAAGAATAAAATCGTAGATATAAGAGAGGAAATCTTGCGGAAGAGAAGAGCCGGAAAGCTTCCGGGCGACACCACTTCGGTGTTAAAGGCATGGTGGGAATCACATGCAAAATGGCCATATCCTACGGAGGAAGACAAGGCAAGATTGGTGCAGGAAACGGGTCTTCAGATGAAGCAGATAAATAACTGGTTCATCAATCAGAGGAAGAGGAACTGGCACACTAATCCTTCAGCTTCCAAGACTAAACGCAAGAGGTTAATCTTTTTTTATACAAAACCATGGATGAACTTTCACTTCCATTATGGGTTAGCAGCCACCGACTTTCATTTTTAA 1476 49.05 MAYHNHLSQDLPLHSFTGQPQQLPDQTLSENSSRTILLDQFIAHTSPDPTSKSHHHHHHQPLQTAPNWLNNALLRTQNPHSHFATTTNNANTSFLNLHSTASDSPASHSSNQWLSRPILHRNQSDVIDEAGDALISPSAATLSPESTELNNNANSGETLNKSDGARVEASGDGSGGEGFVNWQNARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVTKYSALSHGAQSMVGDEKELDQFMTHYVLLLCSFKDQLQRQVRVHAVEAVTACWDIEQSLQSLTGDITCISHLYLLRIKPRAFCFTGVSPGEGTGATMSDDDDDQLDSDANLFDGSMDTMGFGPLVPTESERSLIERVRQELKHELKTGYKNKIVDIREEILRKRRAGKLPGDTTSVLKAWWESHAKWPYPTEEDKARLVQETGLQMKQINNWFINQRKRNWHTNPSASKTKRKRLIFFYTKPWMNFHFHYGLAATDFHF 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 823750 826221 - Bda016018.1 Bda03g00080 3339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00080 491 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 318 468 - -
Bda03g00080 491 MobiDBLite consensus disorder prediction 1 30 - -
Bda03g00080 491 Pfam KNOX1 domain 187 228 IPR005540 GO:0003677|GO:0005634
Bda03g00080 491 ProSiteProfiles 'Homeobox' domain profile. 392 455 IPR001356 GO:0003677
Bda03g00080 491 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 318 468 - -
Bda03g00080 491 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 53 297 - -
Bda03g00080 491 ProSiteProfiles ELK domain profile. 372 392 IPR005539 GO:0003677
Bda03g00080 491 MobiDBLite consensus disorder prediction 10 30 - -
Bda03g00080 491 MobiDBLite consensus disorder prediction 139 175 - -
Bda03g00080 491 Gene3D - 393 454 - -
Bda03g00080 491 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 53 297 - -
Bda03g00080 491 SMART KNOX2_2 241 296 IPR005541 GO:0003677|GO:0005634
Bda03g00080 491 CDD homeodomain 395 456 IPR001356 GO:0003677
Bda03g00080 491 SUPERFAMILY Homeodomain-like 394 457 IPR009057 -
Bda03g00080 491 MobiDBLite consensus disorder prediction 139 161 - -
Bda03g00080 491 Pfam Homeobox KN domain 412 451 IPR008422 GO:0003677|GO:0006355
Bda03g00080 491 SMART KNOX1_2 185 229 IPR005540 GO:0003677|GO:0005634
Bda03g00080 491 SMART ELK_2 372 393 IPR005539 GO:0003677
Bda03g00080 491 SMART HOX_1 394 459 IPR001356 GO:0003677
Bda03g00080 491 Pfam KNOX2 domain 245 295 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00080 Bda-Chr3:823750 Bda07g00506 Bda-Chr7:6463810 2.08E-119 dispersed
Bda01g00755 Bda-Chr1:34791738 Bda03g00080 Bda-Chr3:823750 6.70E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15603 PF03791 KNOX2 1.60E-19 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00080 - - csv:101217292 648.277