Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00094 | ATGGAGGACAGGAATCTTCTGTTTAATAAGTACGAGATTGGGAGGTTATTAGGGAAAGGAACTTTTGCCAAGGTTTGTTATGGAAAACACCTGAGCTCCGGCGAGAGTGTGGCGATTAAAGTGATTAGTAAGGATCAAGTGAAGAAGGAAGGCATGATGGAGCAAATTACCAGAGAGATCTCCGTTATGCGGCTGGTTCGCCATCCTAATATCGTTGAGCTTAAGGAGGTTATGGCTACCAAGACCAAGATCTTCGTTATCATGGATTATGTCCGCGGCGGGGAGCTTTTCGCGAAGGTTGCTAAAGGAAAGCTTAAAGAAGATCAAGCGAGGAAGTACTTTCAGCAATTGATCAGTGCCGTCGATTTTTGCCATAGCAGGGGAGTCTCTCATCGTGATTTAAAGCCGGAAAATCTGTTGTTGGACGAGAATGAGAACCTGAAAATTTCAGATTTCGGCCTTTCGGCTCTGCCGGAACATCTGCGGAACGACGGTCTTCTTCACACGCAGTGCGGTACCCCAGCGTACGTGGCGCCGGAGATTCTGAGAAAAAAAGGCTATGACGGTGGTAAAGCCGATATATGGTCCTGCGGTGTTATTCTTTATGTACTCCTCGCCGGGTTTCTTCCGTTTCGGTCTGAGAATCTTATGAAGATGTACACAAAGGTTTTCAAGGCGGAATTTGAGTGTCCACCGTGGTTTTCGATTGAATCGAAGCGGTTAGTCTCCAAACTGCTCGTCGTCGATCCCGATAAACGAATGACAATCCCGGCGATTATGCGCGTTCCCTGGTTCCGAAGAGGATTATCAAGGCCATTCGCCTTTTCACCAATAGAAATTCCGGAAAGCAAACCGGAAGAAATACCCGACGGCGAGAGTCCAAAAATATCAACTCCAAAGTTTTTCAATGCCTTCGAAATCGTCTCTTCCATGTCGACTGGATTCGATTTGTCGAACCTGTTCGAGAACAAGAAAAAGGCAGGGTCGATGTTCACGTCGAGATTTTCGGCGGCGGCGATCATAACGAAGATCGAGGCGATGGCGAAAGGGCTTGACTTTAAAGTTTCAACGTCAAAGGATTTCAAACTGAATTTGCAGGGGCCGTCGGAGGGAAGGAAAGGAAAGCTCTCAGTGACGGCGGAGGTATTCGAGGCGGCTCCGGAGGTAGCCATCGTAGAATTCTCGAAATCTTCCGGCGACTCGTTGGAATACGCAAAGTTTTGTGAAGAAGAGGTTCGACCGGCATTAAAAGACATAGTGTGGAGCTGGCAAGGTGATTGCGTTTCCAAAAGTGAAAGCCCGTAG | 1305 | 47.66 | MEDRNLLFNKYEIGRLLGKGTFAKVCYGKHLSSGESVAIKVISKDQVKKEGMMEQITREISVMRLVRHPNIVELKEVMATKTKIFVIMDYVRGGELFAKVAKGKLKEDQARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENENLKISDFGLSALPEHLRNDGLLHTQCGTPAYVAPEILRKKGYDGGKADIWSCGVILYVLLAGFLPFRSENLMKMYTKVFKAEFECPPWFSIESKRLVSKLLVVDPDKRMTIPAIMRVPWFRRGLSRPFAFSPIEIPESKPEEIPDGESPKISTPKFFNAFEIVSSMSTGFDLSNLFENKKKAGSMFTSRFSAAAIITKIEAMAKGLDFKVSTSKDFKLNLQGPSEGRKGKLSVTAEVFEAAPEVAIVEFSKSSGDSLEYAKFCEEEVRPALKDIVWSWQGDCVSKSESP | 434 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 895942 | 897246 | + | Bda016032.1 | Bda03g00094 | 3353 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00094 | 434 | SMART | serkin_6 | 11 | 265 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bda03g00094 | 434 | SUPERFAMILY | Protein kinase-like (PK-like) | 7 | 296 | IPR011009 | - | |
Bda03g00094 | 434 | Pfam | Protein kinase domain | 11 | 265 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bda03g00094 | 434 | PANTHER | CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED | 1 | 431 | - | - | |
Bda03g00094 | 434 | Pfam | NAF domain | 299 | 355 | IPR004041 | GO:0007165 | |
Bda03g00094 | 434 | ProSiteProfiles | Protein kinase domain profile. | 11 | 265 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bda03g00094 | 434 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 129 | 141 | IPR008271 | GO:0004672|GO:0006468 | |
Bda03g00094 | 434 | CDD | STKc_SnRK3 | 10 | 264 | - | - | |
Bda03g00094 | 434 | PANTHER | - | 1 | 431 | - | - | |
Bda03g00094 | 434 | Gene3D | Kinase associated domain 1, KA1 | 300 | 422 | - | - | |
Bda03g00094 | 434 | ProSitePatterns | Protein kinases ATP-binding region signature. | 17 | 40 | IPR017441 | GO:0005524 | |
Bda03g00094 | 434 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 299 | - | - | |
Bda03g00094 | 434 | ProSiteProfiles | NAF domain profile. | 297 | 322 | IPR018451 | GO:0007165 | |
Bda03g00094 | 434 | CDD | CIPK_C | 303 | 417 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00094 | Bda-Chr3:895942 | Bda14g01118 | Bda-Chr14:10175510 | 9.34E-175 | dispersed | |
Bda13g01394 | Bda-Chr13:36624073 | Bda03g00094 | Bda-Chr3:895942 | 4.76E-64 | dispersed | |
Bda01g00764 | Bda-Chr1:34939579 | Bda03g00094 | Bda-Chr3:895942 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69521 | PF00069 | Pkinase | 3.80E-73 | CL0016 | Bda | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00094 | - | - | csv:101213773 | 694.115 |