Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00094 ATGGAGGACAGGAATCTTCTGTTTAATAAGTACGAGATTGGGAGGTTATTAGGGAAAGGAACTTTTGCCAAGGTTTGTTATGGAAAACACCTGAGCTCCGGCGAGAGTGTGGCGATTAAAGTGATTAGTAAGGATCAAGTGAAGAAGGAAGGCATGATGGAGCAAATTACCAGAGAGATCTCCGTTATGCGGCTGGTTCGCCATCCTAATATCGTTGAGCTTAAGGAGGTTATGGCTACCAAGACCAAGATCTTCGTTATCATGGATTATGTCCGCGGCGGGGAGCTTTTCGCGAAGGTTGCTAAAGGAAAGCTTAAAGAAGATCAAGCGAGGAAGTACTTTCAGCAATTGATCAGTGCCGTCGATTTTTGCCATAGCAGGGGAGTCTCTCATCGTGATTTAAAGCCGGAAAATCTGTTGTTGGACGAGAATGAGAACCTGAAAATTTCAGATTTCGGCCTTTCGGCTCTGCCGGAACATCTGCGGAACGACGGTCTTCTTCACACGCAGTGCGGTACCCCAGCGTACGTGGCGCCGGAGATTCTGAGAAAAAAAGGCTATGACGGTGGTAAAGCCGATATATGGTCCTGCGGTGTTATTCTTTATGTACTCCTCGCCGGGTTTCTTCCGTTTCGGTCTGAGAATCTTATGAAGATGTACACAAAGGTTTTCAAGGCGGAATTTGAGTGTCCACCGTGGTTTTCGATTGAATCGAAGCGGTTAGTCTCCAAACTGCTCGTCGTCGATCCCGATAAACGAATGACAATCCCGGCGATTATGCGCGTTCCCTGGTTCCGAAGAGGATTATCAAGGCCATTCGCCTTTTCACCAATAGAAATTCCGGAAAGCAAACCGGAAGAAATACCCGACGGCGAGAGTCCAAAAATATCAACTCCAAAGTTTTTCAATGCCTTCGAAATCGTCTCTTCCATGTCGACTGGATTCGATTTGTCGAACCTGTTCGAGAACAAGAAAAAGGCAGGGTCGATGTTCACGTCGAGATTTTCGGCGGCGGCGATCATAACGAAGATCGAGGCGATGGCGAAAGGGCTTGACTTTAAAGTTTCAACGTCAAAGGATTTCAAACTGAATTTGCAGGGGCCGTCGGAGGGAAGGAAAGGAAAGCTCTCAGTGACGGCGGAGGTATTCGAGGCGGCTCCGGAGGTAGCCATCGTAGAATTCTCGAAATCTTCCGGCGACTCGTTGGAATACGCAAAGTTTTGTGAAGAAGAGGTTCGACCGGCATTAAAAGACATAGTGTGGAGCTGGCAAGGTGATTGCGTTTCCAAAAGTGAAAGCCCGTAG 1305 47.66 MEDRNLLFNKYEIGRLLGKGTFAKVCYGKHLSSGESVAIKVISKDQVKKEGMMEQITREISVMRLVRHPNIVELKEVMATKTKIFVIMDYVRGGELFAKVAKGKLKEDQARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENENLKISDFGLSALPEHLRNDGLLHTQCGTPAYVAPEILRKKGYDGGKADIWSCGVILYVLLAGFLPFRSENLMKMYTKVFKAEFECPPWFSIESKRLVSKLLVVDPDKRMTIPAIMRVPWFRRGLSRPFAFSPIEIPESKPEEIPDGESPKISTPKFFNAFEIVSSMSTGFDLSNLFENKKKAGSMFTSRFSAAAIITKIEAMAKGLDFKVSTSKDFKLNLQGPSEGRKGKLSVTAEVFEAAPEVAIVEFSKSSGDSLEYAKFCEEEVRPALKDIVWSWQGDCVSKSESP 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 895942 897246 + Bda016032.1 Bda03g00094 3353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00094 434 SMART serkin_6 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00094 434 SUPERFAMILY Protein kinase-like (PK-like) 7 296 IPR011009 -
Bda03g00094 434 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00094 434 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 431 - -
Bda03g00094 434 Pfam NAF domain 299 355 IPR004041 GO:0007165
Bda03g00094 434 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00094 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Bda03g00094 434 CDD STKc_SnRK3 10 264 - -
Bda03g00094 434 PANTHER - 1 431 - -
Bda03g00094 434 Gene3D Kinase associated domain 1, KA1 300 422 - -
Bda03g00094 434 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Bda03g00094 434 Gene3D Transferase(Phosphotransferase) domain 1 2 299 - -
Bda03g00094 434 ProSiteProfiles NAF domain profile. 297 322 IPR018451 GO:0007165
Bda03g00094 434 CDD CIPK_C 303 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00094 Bda-Chr3:895942 Bda14g01118 Bda-Chr14:10175510 9.34E-175 dispersed
Bda13g01394 Bda-Chr13:36624073 Bda03g00094 Bda-Chr3:895942 4.76E-64 dispersed
Bda01g00764 Bda-Chr1:34939579 Bda03g00094 Bda-Chr3:895942 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69521 PF00069 Pkinase 3.80E-73 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00094 - - csv:101213773 694.115