Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00096 ATGGCATTATTACGCAAGCTATTTTACCGGAACCCGCCGGACGGTCTATTGGAGATCTCTGAAAGGGTCTATGTTTTCAATTGCTGCTATTCCACTGATGTTTTGGAAGAAGAAGAATATAAAGCCTATATAGGAGCCACAGTGGGTCAACTCCGTGAGCATCTCCCTGATGCTTCTTTCATGGTATTCAACTTCCGAGAGGGGGAGAACCAAAGTCATTTAGCAAATATTCTAGCCGAGCACAACATGATTGTAATGGACTATCCTCGACATTACGAAGGCTGCCCTCTTCTGTCTATGGAGATGATCCATCATTTCTTGAGATCGAGTGAAAGTTGGCTATCACTTGGACAACAAAATGTGCTTTTGATGCATTGCGAGCGAGGTGGGTGGCCTGTTTTGGCCTTTATGTTGGCTTCACTCTTGATATATAGGAAGCAGTACAGTGGGGAACAGAAAACTCTTGACATGGTTTACAGGCAAGCACCTAAAGAACTTTTACAGTTGATGACACCTGTTAACCCATTGCCTTCACAGTTGAGGTACCTTCAATATGTATCGAGAAGAAATGTCTCTACAGAATGGCCTCCATCAGATAGGGCGCTTACTTTGGACTGCATCATTATACGATTTATTCCTAATTTGGACGGTGATGGTGGTTTCAGACCAATTTTTAGAATATATGGGCAGGATCCACTTATGGCTAACGATAGGATTCCTAAAGTTTTGTTCTCAACACCAAAAAGAAGCAAACTCATTCGGTATTTTAAACAGGCAGACTGTGAGCTTGCCAAAATTGATATCCGTTGCCATATCCAAGGAGACGTTGTTCTTGAATGTATAAATTTGGACGAGGATTTGGAACGCGAGGAGATGATATTTCGTGTTATGTTTAATACGGCCTTCATAAGGTCAAACATTTTGATGCTTGGACGGAATGAGATTGATAGTTTATGGAACGCCAAGGATCAGTTTCCTAAGGATTTTAGAACCGAGCTTCATGTAATGTTTTGGAATTTTTTCTCATATGTAATGCTTAAAGGTATATTGGGTTATCTAATTGAACTGAGGAGAGCATATAACTGTGAGATCATGCTCTCAAAGGTCAAAATTCCTTTGCCTGATTTGATGGGATCAGTTCTTGCCATGGACGAGTCAGCTTTGAGTGTGGATCAGGTTGAGAACCTCATAAAGTTTTGTCCAACAAAAGAAGAGATGGAACTTCTCAAGGGGTACAGTGGAGATAAAGAAAACTTGGGAAAATGTGAAATTTTCTTTCTAGAATTGATGAAAGTACCACGCGTAGAGTCCAAGCTAAGAGTTTTTTCTTTTAAGATCCAGTTCCATAAAGGAGTGTATTCTTCTCATTTCACATCTCAATCCCTTATCTTAATTGTAAATGACCAGATCAGGGCTTCGCTCAAGTTGAGAAGAGTGATGCAGACCATTCTTTCTTTGGGTAATGCTTTAAACCAGGGAACTGCAAGAGGATCTGCTATTGGATTTCGACTCGATAGTCTTCTTAAGCTCGCTGATACACGAGCTCGTAACAGTAAGATGACTCTCGTGCATTATCTGTGCAAGGTGCTTGCTGAAAAGCTACCAGAACTTTCAGATTTTTCAAATGACCTTGTGAATTTGGAGGCTTCAACGAAGATACAATTGAAATACTTGGCTGAAGAAATGCAAGCCATAAGTAAGGGGCTTGAGAAGGTTGTCCAGGAATTGACTTCAGCAGAAAACGACGGACCCGTCTCTGAGTATTTTTGCGAGGCTTTAAAGAATTTCCTTTCTCATGCTGAGGCTGAAGTGAGGTCTCTTACCTCACTTTATTCTAATGTGGGTAGAAATGCAGATGCATTAGCGCTATATTTTGGAGAGGATCCATCCCGTTGCCCATTTGAACAAGTTGTATCTACCTTGTATAGCTTTGTCAAAACTTTTGAGCGAGCGCATGAGGAAAACTGCAAGCAGCTTGAATTTGAAAAGAAGAAAATGCAAAAAGAGACGGAAATGGAGAAGCTAAAGACCAGTTTTTCGAGGAACGTGTCTGAACGTTCTATACAGACGCTAATAAAAAGTGGTGACATCCATTACACGAGTTTCACCAGCAAAAGACCTATCTAG 2127 40.86 MALLRKLFYRNPPDGLLEISERVYVFNCCYSTDVLEEEEYKAYIGATVGQLREHLPDASFMVFNFREGENQSHLANILAEHNMIVMDYPRHYEGCPLLSMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLASLLIYRKQYSGEQKTLDMVYRQAPKELLQLMTPVNPLPSQLRYLQYVSRRNVSTEWPPSDRALTLDCIIIRFIPNLDGDGGFRPIFRIYGQDPLMANDRIPKVLFSTPKRSKLIRYFKQADCELAKIDIRCHIQGDVVLECINLDEDLEREEMIFRVMFNTAFIRSNILMLGRNEIDSLWNAKDQFPKDFRTELHVMFWNFFSYVMLKGILGYLIELRRAYNCEIMLSKVKIPLPDLMGSVLAMDESALSVDQVENLIKFCPTKEEMELLKGYSGDKENLGKCEIFFLELMKVPRVESKLRVFSFKIQFHKGVYSSHFTSQSLILIVNDQIRASLKLRRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLADTRARNSKMTLVHYLCKVLAEKLPELSDFSNDLVNLEASTKIQLKYLAEEMQAISKGLEKVVQELTSAENDGPVSEYFCEALKNFLSHAEAEVRSLTSLYSNVGRNADALALYFGEDPSRCPFEQVVSTLYSFVKTFERAHEENCKQLEFEKKKMQKETEMEKLKTSFSRNVSERSIQTLIKSGDIHYTSFTSKRPI 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 902807 911218 - Bda016034.2 Bda03g00096 3355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00096 708 SMART it6_source 303 708 IPR015425 -
Bda03g00096 708 ProSiteProfiles Formin homology-2 (FH2) domain profile. 290 674 IPR015425 -
Bda03g00096 708 Gene3D - 196 337 - -
Bda03g00096 708 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 334 IPR035892 -
Bda03g00096 708 Coils Coil 649 669 - -
Bda03g00096 708 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Bda03g00096 708 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Bda03g00096 708 SUPERFAMILY Formin homology 2 domain (FH2 domain) 352 677 - -
Bda03g00096 708 Gene3D Protein tyrosine phosphatase superfamily 11 191 IPR029021 -
Bda03g00096 708 Gene3D Formin, FH2 domain 352 680 IPR042201 -
Bda03g00096 708 PANTHER FORMIN-J 357 682 - -
Bda03g00096 708 PANTHER FORMIN-J 1 337 - -
Bda03g00096 708 SMART PTEN_C2_2 197 337 IPR014020 -
Bda03g00096 708 Pfam Formin Homology 2 Domain 353 648 IPR015425 -
Bda03g00096 708 Pfam C2 domain of PTEN tumour-suppressor protein 199 334 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00096 - - - zju:107419746 592.038
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00096 Bda-Chr3:902807 Bda11g01706 Bda-Chr11:51303533 5.80E-50 dispersed
Bda03g00096 Bda-Chr3:902807 Bda14g00861 Bda-Chr14:6618208 4.29E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g572 . Blo12g01054 . Bda03g00096 . . . . . . Cma01g01662 . Car09g00362 . . . Cpe06g00297 . . . . . . . Cla05g01683 Cam05g1798 Cec05g1807 Cco05g1867 Clacu05g1785 Cmu05g1671 Cre05g1800 . . Cone17ag0984 Cone20ag0324 Lsi04g02074 . . . . . . . Bpe14g00599 . . Bma02g00008 Sed05g1743 Cmo01g01711 Cmo09g00417 Cma09g00412 . Car01g01277 . . Cpe02g00327 Bhi09g03005 Tan01g3567 Cmetu07g0822 . Hepe01g1968 Mch11g0505 . . . . . . . . . . . Cme07g00118
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g01477 . 397 850 FH2 protein (formin) Gene Family AT3G25500 58.5 1.3e-133 474.6
Bda14g01277 . 431 867 FH2 protein (formin) Gene Family AT3G25500 60.0 1.7e-133 474.2
Bda08g01073 . 394 826 FH2 protein (formin) Gene Family AT3G25500 52.6 3.4e-110 396.7
Bda07g01671 . 463 718 FH2 protein (formin) Gene Family AT3G25500 69.9 3.2e-92 337.0
Bda11g01477 . 415 871 FH2 protein (formin) Gene Family AT2G43800 53.8 3.5e-124 443.0
Bda14g01277 . 444 879 FH2 protein (formin) Gene Family AT2G43800 54.5 8.1e-121 431.8
Bda13g00633 BCT 159 433 FH2 protein (formin) Gene Family AT4G15200 50.7 2.1e-56 216.9
Bda07g00336 BCT 379 528 FH2 protein (formin) Gene Family AT4G15200 62.9 3.1e-47 186.4
Bda07g00336 BCT 391 848 FH2 protein (formin) Gene Family AT5G54650 63.7 9.9e-159 557.8
Bda13g00633 BCT 299 756 FH2 protein (formin) Gene Family AT5G54650 63.4 1.0e-155 547.7
Bda06g00343 BCT 284 727 FH2 protein (formin) Gene Family AT5G54650 59.9 1.2e-148 524.2
Bda08g01073 . 425 831 FH2 protein (formin) Gene Family AT5G54650 52.0 1.1e-109 394.8
Bda11g01477 . 429 835 FH2 protein (formin) Gene Family AT5G54650 50.5 4.1e-104 376.3
Bda09g00382 BCT 187 493 FH2 protein (formin) Gene Family AT5G54650 58.9 6.1e-92 335.9
Bda14g01277 . 35 886 FH2 protein (formin) Gene Family AT5G67470 54.0 1.6e-212 736.5
Bda11g01477 . 35 878 FH2 protein (formin) Gene Family AT5G67470 55.1 1.0e-208 723.8
Bda08g01073 . 430 829 FH2 protein (formin) Gene Family AT5G67470 53.4 2.5e-109 393.7
Bda07g01671 . 467 735 FH2 protein (formin) Gene Family AT5G67470 54.4 1.2e-63 241.9
Bda10g01006 . 250 727 FH2 protein (formin) Gene Family AT1G59910 50.4 1.0e-118 424.9
Bda10g01006 . 127 724 FH2 protein (formin) Gene Family AT1G70140 50.2 6.9e-137 485.0
Bda11g01477 . 413 835 FH2 protein (formin) Gene Family AT3G05470 50.2 4.6e-108 389.4
Bda14g01277 . 448 850 FH2 protein (formin) Gene Family AT3G05470 50.4 4.7e-105 379.4
Bda11g01706 BCT 4 162 FH2 protein (formin) Gene Family AT1G31810 59.4 1.3e-39 162.5
Bda14g00861 BCT 1539 1858 FH2 protein (formin) Gene Family AT5G07650 71.6 2.6e-123 439.9
Bda03g00096 . 354 676 FH2 protein (formin) Gene Family AT5G07650 60.7 6.8e-103 372.1
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT5G07650 70.2 8.7e-50 195.7
Bda14g00861 BCT 1449 1853 FH2 protein (formin) Gene Family AT5G07770 63.1 1.6e-133 473.4
Bda03g00096 . 353 669 FH2 protein (formin) Gene Family AT5G07770 58.4 5.1e-95 345.5
Bda11g01706 BCT 4 146 FH2 protein (formin) Gene Family AT5G07770 66.7 1.1e-44 178.3
Bda14g00861 BCT 1463 1858 FH2 protein (formin) Gene Family AT3G32400 64.3 3.1e-138 488.8
Bda03g00096 . 353 676 FH2 protein (formin) Gene Family AT3G32400 73.5 2.1e-126 449.5
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT3G32400 62.9 2.7e-41 166.8
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT2G25050 65.6 1.8e-43 175.3
Bda14g00861 BCT 1464 1858 FH2 protein (formin) Gene Family AT5G07780 59.9 2.4e-116 416.0
Bda03g00096 . 353 676 FH2 protein (formin) Gene Family AT5G07780 56.7 2.6e-86 316.2
Bda11g01706 BCT 4 153 FH2 protein (formin) Gene Family AT5G07780 70.2 1.9e-44 177.2
Bda11g01706 BCT 4 160 FH2 protein (formin) Gene Family AT5G07740 75.3 2.0e-56 218.8
Bda14g00861 BCT 1538 1867 FH2 protein (formin) Gene Family AT5G07760 69.3 6.7e-120 428.7
Bda03g00096 . 353 676 FH2 protein (formin) Gene Family AT5G07760 61.2 2.8e-102 370.2
Bda11g01706 BCT 6 149 FH2 protein (formin) Gene Family AT5G07760 69.0 4.6e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00096 Bda_Chr03 FPKM 4.520958 4.448378 7.33385 6.686157 5.132028 5.999884 6.125944 11.362496 12.098598