Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00108 ATGGTATCAAAGGGAAGGGAATCAGAAAAGAAAAAGGAGGAGGACAAGCCAAAAGAAAAAGAGAAAGGGAAGTCTCGAAACATAGATCATTTTATGGAGGAGTTGAAGCATGAGCAAGAGATGAGGGAGAGACGAAATCAAGATCGTGAATACTGGCGTGAGGGACGCCAGAGTGAGAGTTCTGCTCCATCAAGTCGCTTTGATGAATTGCCTGATGACTTTGATCCAAGTGGAAAATTTGCTGGATCTTTTGACGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTGTCTCCAAAGGTTGATGAAAATTTTCTCCTTCGCACGTTTGGAAGATTTGGGCCCATTGCTAGTGTCAAGATTATGTGGCCACGAACTGAAGAGGAGCGGAGGAGGCAAAGAAATTGTGGTTTTGTTGCTTTTATGAATAGACCTGATGGTCAGGCTGCGAAAGATGAAATGCAAGGGGTTATTGTTTATGAATATGAGTTAAAAATTGGATGGGGCAAATCTGTGGCTCTTCCATCACAAGCTCTTCCAGCACCCCCACCAGGACAAATGGCCATCAGGAGTAAGGAGGGTGCTACTGTAATATTATCTGGTCCATCTGGGCCACCTGTCACTTCAGTTCCAAACCAGAATTCTGAACTGGTTCTTACTCCAAACGTACCTGATATTACTGTTGTTCCACCCGAGGATGATCATCTCCTCCATGTGATTGATACAATGGCTCTTTTTGTTCTTGATGGAGGATGTTCATTTGAACAAGCTATTATGGAGAGGGGGCGAGGGAATCCTCTTTTCAACTTCTTGTTTGAGCTTGGCTCTAAAGAACACACGTATTATGTTTGGAGACTTTACTCATTTGCTCAGGGTGATACTCTCCAAAGATGGCGAACAGAACCTTTTATCATGATAACTGGTAGTGGGAGATGGATCCCACCACCTTTACCAACAGCAAAAAGTCCAGAGCATGAAAAAGAATCTGGTTCCACATATGCCGCAGGAAGAAGCAAGCGCTTGGAACTGGAAAGAGCATTGACTGACTCTCAAAGGGATGAGTTTGAGGACATGCTCCGCGCATTGACATTGGAGAGGAGCCAAATTAAGGAAGCTATGGGGTTTGCATTAGATAATACAGATGCAGCTGGAGAGGTTGTTGAAGTTCTGACTGAATCTTTGACGCTTAAAGAGACCCCTATTCCTACGAAAGTTGCAAGGCTGATGCTTGTATCTGATATTCTTCATAATAGTAGTGCCCCAGTAAAGAATGCATCTGCATATAGGACAAAATTTGAAGCAACATTGCCTGATATTATGGAGAGCTTTAATGATCTGTATAGAGGCATTACTGGAAGGATAACAGCAGAGGCCCTTAAGGAACGAGTACTGAAAGTGTTACAAGTGTGGTCAGATTGGTTTTTATTTTCAGATGCATACGTAAATGGGTTGCGAGCCACTTTTCTTAGATCAGGAAGCTCAGGGGTGATTTCTTTTCATTCTATTTGTGGTGATGCCCCTGAGGTAGACAAAAAGACCAATTGTGAGGATTCAGGTGGTTTGGCCAAGATCAATCAAGATGCTGCACTGGCAATGAATAAAGGGGCAGCTACAAAGGAACTAATGAATCTCCCATTAGCTGAGTTGGAGAGACGGTGCAGACATAATGGATTGTCCCTTATTGGTGGTAGAGAAATAATGGTTGCAAGGTTGCTCAGTCTTGAAGAAGCAGAAAAACAAAGAGGGTATGAGATAGAAGATGACTTCAAATATGCTCATGGCCATTCCAGTACAGGCAGACTTTCTGGTAGTCAGGGTGCAATGAGTGCTGAACATGAGTCAATTGGTTTATCTGGGTGGAACCGTTACAGGGAGGAGGAGATTCAGTCCGTGGGAAAAGGCTCTGCTCCTTTGGCTCAGACCTTATCCATTCCGCACCCTGAACTGAAAGCATTTTCAAAGAAAGATAAAAGTGATCCTGTTTTACCAGCCTCTAAGTGGGCTAGAGAGGATGATGAAAGTGATGATGAACAAAAGCAAAGTGCCCGGCAGCTTGGGTTAAGTTATTCATCTTCCGGAAGTGAGAATGCTGGCGAAGGTCCTAGTAAAACAGATGACGTAGAATTTTCTACTGATTCAGGCATAACATCGCAAACTGAGAATGGAATGAGTGACGAACAGAGACAAAAGTTAAGACGCCTTGAGGTTGCCTTGATTGAGTATCGTGAATCTCTTGAAGACCAAGGAATAAGAAGTTTTGAAGAAATTGAGAGGAAAGTTGCCAGTCGTCGTAAGCTTCTAGAATCTGAATTTGGGTTATCAAATTTCAATGAAGATGCTTCCGGGAAGAAGAGGAGAGACAGACGTGATGATATCCATGATTCTTCAAGAAAGAGAAACCGTAGTCAGAGCAGTGACCGGGAAAGAGATTATGGTATAGACAGGGACCGAGAAAGAGTTAGAGAAAGAGATCGTGAAAAGGGTGGCAGTAAAGAGAAAGATGACCATGACAGGGATCGAAACAGGGAGAAGGAAAGAGACAGGAGGAGAAGAGGAAAATGA 2568 43.22 MVSKGRESEKKKEEDKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQDREYWREGRQSESSAPSSRFDELPDDFDPSGKFAGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRPDGQAAKDEMQGVIVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTSVPNQNSELVLTPNVPDITVVPPEDDHLLHVIDTMALFVLDGGCSFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPTAKSPEHEKESGSTYAAGRSKRLELERALTDSQRDEFEDMLRALTLERSQIKEAMGFALDNTDAAGEVVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRGITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGSSGVISFHSICGDAPEVDKKTNCEDSGGLAKINQDAALAMNKGAATKELMNLPLAELERRCRHNGLSLIGGREIMVARLLSLEEAEKQRGYEIEDDFKYAHGHSSTGRLSGSQGAMSAEHESIGLSGWNRYREEEIQSVGKGSAPLAQTLSIPHPELKAFSKKDKSDPVLPASKWAREDDESDDEQKQSARQLGLSYSSSGSENAGEGPSKTDDVEFSTDSGITSQTENGMSDEQRQKLRRLEVALIEYRESLEDQGIRSFEEIERKVASRRKLLESEFGLSNFNEDASGKKRRDRRDDIHDSSRKRNRSQSSDRERDYGIDRDRERVRERDREKGGSKEKDDHDRDRNREKERDRRRRGK 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 969039 976233 - Bda016047.1 Bda03g00108 3367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00108 855 MobiDBLite consensus disorder prediction 668 682 - -
Bda03g00108 855 MobiDBLite consensus disorder prediction 709 726 - -
Bda03g00108 855 Pfam cwf21 domain 727 770 IPR013170 -
Bda03g00108 855 MobiDBLite consensus disorder prediction 596 615 - -
Bda03g00108 855 ProSiteProfiles SURP motif repeat profile. 241 284 IPR000061 GO:0003723|GO:0006396
Bda03g00108 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 173 IPR000504 GO:0003723
Bda03g00108 855 CDD RRM_SR140 91 174 IPR035009 -
Bda03g00108 855 Coils Coil 354 374 - -
Bda03g00108 855 SUPERFAMILY ENTH/VHS domain 351 491 IPR008942 -
Bda03g00108 855 MobiDBLite consensus disorder prediction 1 56 - -
Bda03g00108 855 MobiDBLite consensus disorder prediction 668 730 - -
Bda03g00108 855 SUPERFAMILY Surp module (SWAP domain) 215 296 IPR035967 GO:0003723|GO:0006396
Bda03g00108 855 Pfam Surp module 239 291 IPR000061 GO:0003723|GO:0006396
Bda03g00108 855 ProSiteProfiles CID domain profile. 349 494 IPR006569 -
Bda03g00108 855 SMART 558neu5 356 491 IPR006569 -
Bda03g00108 855 PANTHER RNA PROCESSING PROTEIN LD23810P 3 850 - -
Bda03g00108 855 Gene3D - 725 776 - -
Bda03g00108 855 MobiDBLite consensus disorder prediction 317 337 - -
Bda03g00108 855 MobiDBLite consensus disorder prediction 323 337 - -
Bda03g00108 855 SMART rrm1_1 93 169 IPR000504 GO:0003723
Bda03g00108 855 MobiDBLite consensus disorder prediction 769 855 - -
Bda03g00108 855 MobiDBLite consensus disorder prediction 683 701 - -
Bda03g00108 855 MobiDBLite consensus disorder prediction 1 88 - -
Bda03g00108 855 Pfam CID domain 356 484 IPR006569 -
Bda03g00108 855 SMART surpneu2 239 293 IPR000061 GO:0003723|GO:0006396
Bda03g00108 855 MobiDBLite consensus disorder prediction 781 848 - -
Bda03g00108 855 SMART cwf21_2 725 773 IPR013170 -
Bda03g00108 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 166 IPR000504 GO:0003723
Bda03g00108 855 SUPERFAMILY RNA-binding domain, RBD 85 182 IPR035979 GO:0003676
Bda03g00108 855 Gene3D - 2 175 IPR012677 -
Bda03g00108 855 Coils Coil 726 746 - -
Bda03g00108 855 Gene3D - 350 495 IPR008942 -
Bda03g00108 855 Gene3D Surp module 227 296 IPR035967 GO:0003723|GO:0006396
Bda03g00108 855 MobiDBLite consensus disorder prediction 599 613 - -
Bda03g00108 855 PANTHER - 3 850 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00108 K12842 SR140; U2-associated protein SR140 - qsu:112031059 1346.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00108 Bda-Chr3:969039 Bda02g00635 Bda-Chr2:47252686 1.03E-09 dispersed
Bda03g00108 Bda-Chr3:969039 Bda01g00562 Bda-Chr1:32626186 5.59E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00108 Bda_Chr03 FPKM 0.0 0.0 1.761602 1.176347 1.71393 0.0 0.0 4.33096 4.027164