Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00113 AAAGAAAGCTCTCTCAAGGTGGTGCACAGGCATGGCCCGTGTAATCAACACAAACAAGATGTATCAAATGTTCCGACGCATGATGAGATTCTACTCCAAGACCAGTCTCGTGTCAATTTCATTCACTCTCGACTTTCAAAAGTCTCGGGAGATGGCGATTTGAGGTTCTCCGAGGCTTCGACGCTTCCGGCTAAGTCTGGTTCGGTTGTTGGCTCTGGCAACTACATTGTGACGGTGGGTTTGGGCACTCCCAAAAAGGAGCTCTCACTCATATTTGACACGGGCAGCGACCTGACTTGGACTCAATGCGAGCCTTGCGTCAAATCCTGCTACAAGCAACAGGAGCCAATCTTCACACCGTCTCAATCGTCTTCCTACATGAACATCTCCTGCTCTTCGTCATTCTGCTCTCAGCTTCAATCTGGAACTGGAAATACCCCTAGTTGCTCTGCTTCAACATGTGTCTACGGCATTCAATATGGAGATCAATCCTTTTCAATCGGATTTTTTGCTCAAGAAAAGCTCTCTCTAACTGCAACTGATGTCTTTGATGATTTCCTCTTTGGCTGCGGTCAAAACAATCAAGGCCTGTTTGGCGGAGCAGCTGGCCTACTAGGCCTAGGCCGTGACAGAATTTCTGTTGTCCAACAGACAGCACAAAAATACGGGAAAATCTTCTCTTATTGTCTACCATCCACCACTAGCTTAACCGGCCACCTCACCTTCGGCAGTGGAAGTGGGGCAGTTGTGAAATACACACCATTATCTTCTGCCTCTCTGGGTTCCAGCTACTATGCACTAGACATGGTTGCCATAAGTGTCGGAGGTCGCCGATTACCAATTCCAAGCTCAGTTTTTAGAATAGCTGGGTCAATCATCGACTCTGGCACGGTGATCACACGATTGCCGCCTGCAGCGTATAGTGCACTGAAGTTGGAATTTCAAAGAGGAATGGCAGCCTATCCGAAAGCCCAAGCACTTTCCATACTCGATACCTGCTATGACCTGACCGGTTACACCACCATCAATGTCCCAAAAATAAGCTTTTTCTTCAATGGAAGTGTGACAGTAGAATTAGACTTTTCCGGGATTTTTTTTGCAGCGAGTCAGTCGCAGTCGCAGGTTTGCTTGGCTTTTGCTGGTAATAAAGATGCTTCAAATGTGGCAATCTTTGGTAATGTGCAGCAGAAAACATTGGAGGTGGTTTATGATATTGCTGGGGGGAGGGTCGGGTTTGGTCCAGGTGGATGTAAATAA 1257 47.18 KESSLKVVHRHGPCNQHKQDVSNVPTHDEILLQDQSRVNFIHSRLSKVSGDGDLRFSEASTLPAKSGSVVGSGNYIVTVGLGTPKKELSLIFDTGSDLTWTQCEPCVKSCYKQQEPIFTPSQSSSYMNISCSSSFCSQLQSGTGNTPSCSASTCVYGIQYGDQSFSIGFFAQEKLSLTATDVFDDFLFGCGQNNQGLFGGAAGLLGLGRDRISVVQQTAQKYGKIFSYCLPSTTSLTGHLTFGSGSGAVVKYTPLSSASLGSSYYALDMVAISVGGRRLPIPSSVFRIAGSIIDSGTVITRLPPAAYSALKLEFQRGMAAYPKAQALSILDTCYDLTGYTTINVPKISFFFNGSVTVELDFSGIFFAASQSQSQVCLAFAGNKDASNVAIFGNVQQKTLEVVYDIAGGRVGFGPGGCK 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1014277 1016137 + Bda016052.1 Bda03g00113 3372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00113 418 SUPERFAMILY Acid proteases 69 417 IPR021109 -
Bda03g00113 418 Pfam Xylanase inhibitor C-terminal 265 413 IPR032799 -
Bda03g00113 418 ProSiteProfiles Peptidase family A1 domain profile. 75 413 IPR033121 -
Bda03g00113 418 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN, PUTATIVE-RELATED 1 417 - -
Bda03g00113 418 Gene3D Acid Proteases 55 244 IPR021109 -
Bda03g00113 418 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 90 101 IPR001969 GO:0004190|GO:0006508
Bda03g00113 418 Pfam Xylanase inhibitor N-terminal 75 244 IPR032861 -
Bda03g00113 418 PANTHER ASPARTYL PROTEASES 1 417 IPR001461 GO:0004190|GO:0006508
Bda03g00113 418 Gene3D Acid Proteases 246 418 IPR021109 -
Bda03g00113 418 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Bda03g00113 418 PRINTS Pepsin (A1) aspartic protease family signature 291 302 IPR001461 GO:0004190|GO:0006508
Bda03g00113 418 PRINTS Pepsin (A1) aspartic protease family signature 389 404 IPR001461 GO:0004190|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00113 - - - qsu:112039158 565.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01764 Bda-Chr1:53854347 Bda03g00113 Bda-Chr3:1014277 9.65E-65 dispersed
Bda03g00113 Bda-Chr3:1014277 Bda08g00101 Bda-Chr8:888307 1.49E-73 dispersed
Bda03g00113 Bda-Chr3:1014277 Bda14g00467 Bda-Chr14:3365324 3.81E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g614 . . . Bda03g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00099 . . Sed05g1816 . . . . . . . . Bhi09g03045 Tan01g3527 Cmetu07g1748 . Hepe01g1942 Mch11g0478 . . . . . . . . . . . Cme07g00147
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00113 Bda_Chr03 FPKM 16.717728 18.53393 30.435545 28.582233 12.24743 11.261672 12.860732 22.382978 22.813652