Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00119 ATGGAAAATTTGGCTGGTCCAAAAACGGATAAATTACACGATTTAAACATATTTAATAGTAACTTAAAAAATGAACATGGCATTTCTTCTTCAGCCGCGTTTTACCAGCAAAACCACAACCGCGTCACCCGTCCGACCATATCAGTATGCTTCTCCACTTTGACTTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTCGTTGGACAGACTGCAGCCTCCTTTCTTTCGAATCAACACGGTTCCACCTTTCTCAGGTTCCAGAAATAAGATGTTCTTCCCACTATATATACTCCAACCCGTGTTGCCGACATCGCAATTATTCCACTTATCTTTGGTTTTTGCCGAGAAAAATGGCGAACCCTGAAGCCAGTACTTCCAACGAACAACCGAGTTACGAGTCCAAGTTTAAGGGGGTGAGAAAACGTAAATGGGGTAAGTGGGTTTCCGAAATTAGGCTTCCTAACAGTCGTGAGAGAATATGGTTAGGCTCTTACGACTCGCCGGAAAAAGCAGCCAGAGCTTTTGACGCAGCGCAGTTCTGCCTCCGCGGCCGCCACGCTAACTTTAACTTCCCCGGAAGTCTCCCGGAGATTGATGGTGCACAATTGCTCAGCCCGCACCAGATTCAGATCGCCGCTGCTAAATTCGCCAACGAACGCGATTCTCAGCAAATGTCTAGGGATGATGATAGCTTGAGAGAACGGGGAGATTTACAGGCTGTAGCTCACAACAATTGCGGGAACTGGTTGGCTTCTTCTTCTTCTTCGACCATTTCCGAGAGGCCTGTAAACTTACACGACGGAGAGACGAGGATTGATTGGTCGTTTTTGGACGCATTAAACACAAACAATGATGAAGGGTACACAGCTTTTCCTCAGTCGCCATTGATGCCAGAACACACCCTTCAGGAAAACGAAGACGCAGACATGGATGATTTTTTTTCTCATCTGCCATTTCTATGGAACTTCGACAGTTAG 975 46.36 MENLAGPKTDKLHDLNIFNSNLKNEHGISSSAAFYQQNHNRVTRPTISVCFSTLTSLSLSLSLSARWTDCSLLSFESTRFHLSQVPEIRCSSHYIYSNPCCRHRNYSTYLWFLPRKMANPEASTSNEQPSYESKFKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAAQFCLRGRHANFNFPGSLPEIDGAQLLSPHQIQIAAAKFANERDSQQMSRDDDSLRERGDLQAVAHNNCGNWLASSSSSTISERPVNLHDGETRIDWSFLDALNTNNDEGYTAFPQSPLMPEHTLQENEDADMDDFFSHLPFLWNFDS 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1038572 1039546 + Bda016058.1 Bda03g00119 3378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00119 324 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Bda03g00119 324 PRINTS Ethylene responsive element binding protein signature 157 173 IPR001471 GO:0003700|GO:0006355
Bda03g00119 324 Gene3D AP2/ERF domain 133 192 IPR036955 GO:0003700|GO:0006355
Bda03g00119 324 CDD AP2 133 191 IPR001471 GO:0003700|GO:0006355
Bda03g00119 324 ProSiteProfiles AP2/ERF domain profile. 134 191 IPR001471 GO:0003700|GO:0006355
Bda03g00119 324 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 119 322 - -
Bda03g00119 324 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017 119 322 - -
Bda03g00119 324 SUPERFAMILY DNA-binding domain 133 192 IPR016177 GO:0003677
Bda03g00119 324 SMART rav1_2 134 197 IPR001471 GO:0003700|GO:0006355
Bda03g00119 324 Pfam AP2 domain 133 183 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00119 - - - rcu:8258612 168.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01988 Bda-Chr1:56254613 Bda03g00119 Bda-Chr3:1038572 1.65E-41 dispersed
Bda03g00119 Bda-Chr3:1038572 Bda11g01007 Bda-Chr11:9873907 8.77E-41 dispersed
Bda11g00742 Bda-Chr11:7462621 Bda03g00119 Bda-Chr3:1038572 1.22E-25 dispersed
Bda03g00119 Bda-Chr3:1038572 Bda03g00120 Bda-Chr3:1054923 2.22E-135 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g185 . Blo12g01035 . Bda03g00119 . . . . . . Cma01g01691 . Car09g00328 . Sed11g0856 . . Bhi04g01537 Tan02g1566 Cmetu03g1197 . Hepe08g1454 . Lcy13g2235 Cla05g01643 Cam05g1753 Cec05g1762 Cco05g1818 Clacu05g1744 Cmu05g1629 Cre05g1758 . . Cone17ag0957 Cone20ag0301 Lsi04g01372 . . . . . . . . Bpe04g00104 . . Sed13g1932 . Cmo09g00380 Cma09g00378 . Car01g01306 Car05g00886 . Cpe02g00301 Bhi09g03062 Tan01g3504 Cmetu07g1108 . Hepe01g1929 Mch11g0466 . Cla08g00976 Cam08g1424 Cec08g1002 Cco08g1125 Clacu08g1130 . Cre08g0912 Lsi08g00823 . Chy03g00645 Cme07g00162
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009714 2 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15607 PF00847 AP2 1.10E-12 CL0081 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00119 Bda_Chr03 FPKM 5.169804 4.437136 5.598681 5.686329 8.238941 9.243594 7.533695 6.429344 6.314078