Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00121 ATGGGTTTACTCTGCAGCAGAAGCCGTCATTACAATGAAGCAGACGATGAAGAGAATGCGCAGGCTGCAGATATAGAAAGGCGGATTGAGCAAGAAACAAAGGCCGAAAAGCATATTCAGAAACTTCTTCTACTTGGTGCTGGGGAGTCTGGAAAATCCACAATTTTTAAGCAGGCAAGGTGTTTTGTTTATTCATCTGGTAAATTATACTGTCCGATTTTGATTCTAATAAAAGTTCATTTTCCACTGTTAATGCAGATAAAACTTTTGTTTCAAACTGGCTTTGATGAGGCTGAATTGAAAAGTTATACCTCAGTCGTCCATGCCAATGTATATCAGACTATAAAAATATTATATGATGGGTCGAAGGAGCTCTCTCAAAATGACACAGATTACTCGAAGTATGTCATATCCGGTGAAAATAAGGAAGTTGGGGAGAGACTATCTAAAATTGGAGGCGGATTGGATTACCCTCGTCTCACAAAAGAGCTAGCGCAAGATGTGGAAACTTTGTGGAAGGAAGCTGCTATACAGGAAACATATGCTCGTGGTAACGAACTCCAGGTTCCAGACTGTGCTCAATATTTCATGGGAAATTTGGAGCGATTATCTGACAATGATTATGTTCCAACCATGGAGGATGTTCTCTATGCAAGAATTCGTACAACTGGTGTTGTGGAGATTCAGTTCAGCCCGGTGGGAGAAAACAAGAGAAGTGGGGAAGTATACAGGCTCTTTGATGTTGGAGGTCAGAGAAATGAAAGGAGAAAATGGATCCATCTATTTGAAGGTGTTTCAGCTGTAATCTTTTGTGCTGCTATTATGGGTAAGTGGGTTATCAGGTACGATCAAACTCTCTTTGAAGACGAAAACAAAAACCGAATGATAGAGACAAAGGAACTCTTCGAGTGGGTGCTGAAACAAGAATGTTTTGAGAAAACGTCTTTCATGCTGTTTTTGAACAAATTCGACATATTCGAGAAGAAGGTTCTGAAGGTCCCTCTGAATATTTGCAAATGGTTCAAAGATTACCGCCCTGTTTCAAATGGAAAACAAGAGATTGAGCACGCCTACGAGTATGTGAAGAAGAAATTTGAGGAGTTGTATTTCCAGAGCACCGCCCCGGATCGAGTGGACCGGGTTTTTAAGGTGTACAGAACGACTGCTCTTGATCAGAAACTCGTCAAGAAGGCTTTCAAGCTCGTCGACGAGACTTTAAGGCGGAGAAATCTCTTCGAGGCGGGCCTATTGTAA 1254 41.47 MGLLCSRSRHYNEADDEENAQAADIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQARCFVYSSGKLYCPILILIKVHFPLLMQIKLLFQTGFDEAELKSYTSVVHANVYQTIKILYDGSKELSQNDTDYSKYVISGENKEVGERLSKIGGGLDYPRLTKELAQDVETLWKEAAIQETYARGNELQVPDCAQYFMGNLERLSDNDYVPTMEDVLYARIRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAIMGKWVIRYDQTLFEDENKNRMIETKELFEWVLKQECFEKTSFMLFLNKFDIFEKKVLKVPLNICKWFKDYRPVSNGKQEIEHAYEYVKKKFEELYFQSTAPDRVDRVFKVYRTTALDQKLVKKAFKLVDETLRRRNLFEAGLL 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1068728 1072052 + Bda016060.2 Bda03g00121 3380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00121 417 Gene3D - 96 221 IPR011025 GO:0007165
Bda03g00121 417 SUPERFAMILY Transducin (alpha subunit), insertion domain 95 220 IPR011025 GO:0007165
Bda03g00121 417 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 1 417 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Bda03g00121 417 Gene3D - 84 405 IPR027417 -
Bda03g00121 417 ProSiteProfiles G-alpha domain profile. 38 417 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda03g00121 417 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 1 417 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda03g00121 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 414 IPR027417 -
Bda03g00121 417 SMART galpha_1 19 416 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda03g00121 417 CDD G-alpha 40 411 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda03g00121 417 PRINTS Alpha G protein (transducin) signature 316 325 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda03g00121 417 PRINTS Alpha G protein (transducin) signature 265 293 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda03g00121 417 PRINTS Alpha G protein (transducin) signature 208 230 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda03g00121 417 PRINTS Alpha G protein (transducin) signature 41 56 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda03g00121 417 PRINTS Alpha G protein (transducin) signature 243 260 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bda03g00121 417 Pfam G-protein alpha subunit 84 405 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00121 K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3 - mnt:21401579 660.988
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00643 Bda03g00121 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00121 Bda-Chr3:1068728 Bda06g01240 Bda-Chr6:42515789 1.46E-50 dispersed
Bda06g00864 Bda-Chr6:11902785 Bda03g00121 Bda-Chr3:1068728 1.39E-51 transposed
Bda01g00643 Bda-Chr1:33464245 Bda03g00121 Bda-Chr3:1068728 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g171 Blo01g01439 Blo12g01033 Bda01g00643 Bda03g00121 . Bpe02g00514 . Bma01g02190 . . . . Car09g00318 . . . Cpe06g00263 . . . . . . . Cla05g01634 Cam05g1743 Cec05g1752 Cco05g1809 Clacu05g1735 Cmu05g1619 Cre05g1747 Cone4ag1703 Cone7ag1619 . . Lsi04g01381 . . . . . . . . Bpe04g00106 . . . . Cmo09g00370 Cma09g00371 . Car01g01312 . . Cpe02g00295 Bhi09g03073 Tan01g3487 . . Hepe01g1922 . . . . . . . . . . . . Cme07g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004075 2 3 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 7 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00121 Bda_Chr03 FPKM 14.101988 13.345165 15.668815 16.220549 13.677564 13.934505 13.835675 17.390781 17.247379
Bda03g00121 Bda_Chr11 FPKM 14.81989 16.501833 30.249414 28.200832 21.830891 19.708765 22.634018 23.358749 21.782116