Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00124 GAAGGAGCGACTTTGTTGGAAATGAAAAAGTCTTTTAAGGACGTAGACAATGTTTTATACGATTGGACGGATTCACCCTCTTCAGATTATTGTGTTTGGAGAGGCATTGAGTGCGACAATATCACCTTCACTGTGGTTGCTCTCAATCTTTCAGGTTTAAACCTTGATGGAGAGATTTCATCCGCAATCGGTGACCTCAAAAGCCTCGTAACCATTGACTTGAGAGGAAATCGTCTCTCGGGGCAAATTCCAGACGAGATTGGTGACTGCTCTTTGTTGAGGAATCTAGACTTGTCATTCAATGATATATATGGAGATATACCGTTTTCTATCTCTAAGTTGAAGCAACTGGAAATGATAGTTTTAAAAAACAATCGCTTGATCGGACCGATTCCCTCTACTCTATCTCAAATTCCAAATCTGAAGGTTTTAGATCTTGCTCAAAATAGCCTAAGCGGAGAAATTCCAAGGCTTCTATACTGGAATGAAGTGCTGCAGTATCTGGGATTACGAGGAAATAATTTGGCTGGTAATCTCTCTCCTGATATTTGCCAACTTACGGGGTTGTGGTACTTTGACGTGAGAAACAACAGTTTGACAGGAAGTATTCCACCAAATATAGGGAACTGCACTGCCTTCCAGGTCTTAGATTTATCATACAATCAGCTTACTGGAGAGATTCCATTCAACATTGGTTTCCTACAAGTTGCCACTTTGTCACTGCAAGGAAATCAACTTTCTGGTCAGATACCTGCTGTCATTGGGTTGATGCAGGCACTTGCAGTGTTAGATCTGAGCTGCAACATGTTAAGTGGTTCCATTCCTCCTATCTTGGGAAACTTGACCTACACAGAGAAATTGTACTTGCATGGCAACAAGCTAAGCGGTCCCATTCCTTTGGAGCTTGGGAATATGACTAAGCTTCATTATCTGGAATTGAATGACAATCAATTAACAGGGCATATTCCTGCGGAGCTTGGAAAGCTTACCGATTTGTTTGATCTAAACATAGCCAACAACAGACTCGAAGGACCTATACCCGCCAATCTTAGTTCATGTACAAATCTGAACAGTCTAAATGTACATGGAAACAAGTTGAATGGCTCCATTCCTCCTGCTTTTCAAAGGCTAGAGAGTATGACTTATCTAAATCTCTCTTCAAACTTTCTTTGGGGGACCATTCCAATTGAGCTGTCTAGGATTGGTAACTTGGACACTTTGGATATATCCAGTAACAAAATTAGTGGGTCGATTCCTTCTTCCCTCGGCGACCTCGAGCACCTCCTTAAGTTGTTCGAACTTAAGCAGAAACGATTTAACTGGATATATCCGGCAGAATTTGGTAATCTAAGAAGTGTTATGGTGATAGATCTTTCCGACAATCATCTCTCAGGCCCGATTCCTCAAGAATTTAGTCAACTTCAGAACATCTTTTCCTTAAAACTGGAAAACAACAATCTGTCGGGGGATGTGTTGTCTTTGATTAACTGCCTGAGTTTAACTGAATTGAACGTATCTTATAATAACTTAGCTGGTGTTATTCCAACCAGCAATAACTTCTCAAGATTCCCATTTGAGAGTTTCATTGGCAATCCTGGTCTCTGTGGATATTGGCTGAATTATCCATGCCTTGAATCTCGGTCTTCAGAGAGAGTCACTATATCTAAAGCGGCAATCATAGGCATTGCTCTTGGTGGCCTCGTGATTCTTCTCATGATCCTCTTGGCTGCATTTCGACCGAACAACACAACTACATTTCCTGATGGATCAATTGACAAACCGGTTAATTATTCAACCCCAAAGCTAGTGATTTTGCATATGAACATGGCACTTCATGTATACGAAGACATTATGAGAATGACCGAAAATTTGAGTGAAAAGTACATAATCGGGTCTGGTGCATCCAGTACAGTATACAAATGTGTTCTTAAAAACTGCAAACCTGTGGCCATCAAAAGACTATACTCCCACTATCCCCAGAGTTTGAAAGAATTCGAAACTGAACTTGAGACGGTGGGAAGCATCAAGCACAGAAATCTGGTCAGCCTCCAGGGTTATTCCTTGTCCCCTTACGGCAACCTTCTCTTCTACGACTATATGGAAAATGGCAGTCTTTGGGATCTTCTACACGGGCCCACGAAAAAGAAAAAACTTGGTTGGGACACCCGGCTTAAGATTGCGCTTGGAGCAGCTCAAGGGCTTTCATATCTACACCATGACTGTAGTCCAAGGATCATCCACAGAGATGTCAAATCGTCTAATATTCTTTTGGACAAGGATTTTGAGCCTCATCTTACGGACTTTGGCATCGCCAAGATCTTATGCACCTCGAAAACTTATACGTCCACCTATATTATGGGCACAATTGGCTATATTGACCCCGAGTATGCTCGAACGTCCCGACTCACAGAGAAATCTGATGTTTACAGTTATGGCATTGTGTTGCTTGAATTGCTCACGGGAAGAAAGGCTGTGGACAATGAGTCAAATCTCCATCATCTGATCTTATCGAAGACACCCAATAATGCTGTTATGGAGACGGTTGATCCTGAGATTACTTCTACGTGTAAGGACGATATCGGAGTGGTGAAGAAAGTGTTTCAACTTGCTCTTCTATGCACCAAACGACAGCCCTCCGAACGCCCGACAATGCATGAAGTGACCCGAGTCCTTGGAAGTCTTGTGCCGACCCCAGCCCCAGCAAAACAAGGAGGGGCAGTGGCTAACATTGTGCTTCCACTCGGACCAACTTCCAAAGGACCGTGCTACGTGGACGAGTATGCGAATTTGAAAACTCCACACATGGTTCATTGCCCATCAATCAGCACGTCAGACGCCCAACTCTTCCTCAAGTTTGGAGAGGTAATATCTCAGAACAGCGAG 2883 42.84 EGATLLEMKKSFKDVDNVLYDWTDSPSSDYCVWRGIECDNITFTVVALNLSGLNLDGEISSAIGDLKSLVTIDLRGNRLSGQIPDEIGDCSLLRNLDLSFNDIYGDIPFSISKLKQLEMIVLKNNRLIGPIPSTLSQIPNLKVLDLAQNSLSGEIPRLLYWNEVLQYLGLRGNNLAGNLSPDICQLTGLWYFDVRNNSLTGSIPPNIGNCTAFQVLDLSYNQLTGEIPFNIGFLQVATLSLQGNQLSGQIPAVIGLMQALAVLDLSCNMLSGSIPPILGNLTYTEKLYLHGNKLSGPIPLELGNMTKLHYLELNDNQLTGHIPAELGKLTDLFDLNIANNRLEGPIPANLSSCTNLNSLNVHGNKLNGSIPPAFQRLESMTYLNLSSNFLWGTIPIELSRIGNLDTLDISSNKISGSIPSSLGDLEHLLKLFELKQKRFNWIYPAEFGNLRSVMVIDLSDNHLSGPIPQEFSQLQNIFSLKLENNNLSGDVLSLINCLSLTELNVSYNNLAGVIPTSNNFSRFPFESFIGNPGLCGYWLNYPCLESRSSERVTISKAAIIGIALGGLVILLMILLAAFRPNNTTTFPDGSIDKPVNYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGSGASSTVYKCVLKNCKPVAIKRLYSHYPQSLKEFETELETVGSIKHRNLVSLQGYSLSPYGNLLFYDYMENGSLWDLLHGPTKKKKLGWDTRLKIALGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFEPHLTDFGIAKILCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTPNNAVMETVDPEITSTCKDDIGVVKKVFQLALLCTKRQPSERPTMHEVTRVLGSLVPTPAPAKQGGAVANIVLPLGPTSKGPCYVDEYANLKTPHMVHCPSISTSDAQLFLKFGEVISQNSE 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1080363 1085957 - Bda033472 Bda03g00124 3383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00124 961 SUPERFAMILY RNI-like 179 514 - -
Bda03g00124 961 Pfam Leucine rich repeat N-terminal domain 2 39 IPR013210 -
Bda03g00124 961 Gene3D Ribonuclease Inhibitor 263 546 IPR032675 -
Bda03g00124 961 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 948 - -
Bda03g00124 961 Gene3D Phosphorylase Kinase; domain 1 593 699 - -
Bda03g00124 961 ProSitePatterns Protein kinases ATP-binding region signature. 630 652 IPR017441 GO:0005524
Bda03g00124 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Bda03g00124 961 SUPERFAMILY Protein kinase-like (PK-like) 601 891 IPR011009 -
Bda03g00124 961 SMART LRR_typ_2 138 162 IPR003591 -
Bda03g00124 961 SMART LRR_typ_2 401 425 IPR003591 -
Bda03g00124 961 SMART LRR_typ_2 305 329 IPR003591 -
Bda03g00124 961 SMART LRR_typ_2 186 210 IPR003591 -
Bda03g00124 961 SMART LRR_typ_2 257 281 IPR003591 -
Bda03g00124 961 SMART LRR_typ_2 66 90 IPR003591 -
Bda03g00124 961 CDD STKc_IRAK 630 894 - -
Bda03g00124 961 SMART serkin_6 624 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00124 961 Gene3D Transferase(Phosphotransferase) domain 1 700 900 - -
Bda03g00124 961 Gene3D Ribonuclease Inhibitor 162 253 IPR032675 -
Bda03g00124 961 Gene3D Ribonuclease Inhibitor 1 161 IPR032675 -
Bda03g00124 961 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Bda03g00124 961 Pfam Protein kinase domain 627 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00124 961 SUPERFAMILY L domain-like 6 319 - -
Bda03g00124 961 ProSiteProfiles Protein kinase domain profile. 624 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00124 961 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 1 948 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00124 Bda-Chr3:1080363 Bda04g00148 Bda-Chr4:4062338 2.22E-168 dispersed
Bda03g00230 Bda-Chr3:1783340 Bda03g00124 Bda-Chr3:1080363 3.32E-10 transposed
Bda05g00016 Bda-Chr5:1222436 Bda03g00124 Bda-Chr3:1080363 0 transposed
Bda01g00642 Bda-Chr1:33452813 Bda03g00124 Bda-Chr3:1080363 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69522 PF00069 Pkinase 2.20E-45 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00124 K20718 - rcu:8258591 1613.2