Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00127 ATGGAAGAGTACATGGCCAGGACCATCTGTCTTTCTGTTGTTTCACTGATTTTGTTCCTTATTTCAATGCTTGCTCATTCCATTTGGTGGAGACCCAAAACCCTGGAGAAGCATTTGAGAAATCAGGGCATTAAAGGCACTGCTTTCAAGCCTGGTGGTGACAAGGACGAGATGAATAATTCTTATGAGAAAGCATGGTCCAAACCCATGAACCTAAACCACAATATTGCTCCCAGAGTCTTACCCTTCTTTTATGAAATGATTCAAACTTATGGGAAAGTGTCTTTTAGCTGGTTTGATAACAAACCAAGACTCGTAATCGGAGACACAGAGCTAATGAGACTGATATTAGCTGATAAGAGAGGCCACTTTGTGAAGCCGCCATTGAACCCTCTGGTAGAGCTTTTACAACTAGGAGTGTCTACTTTGGAAGGAGAGAAATGGGCTAAACGGAGAAGGTTGATGACACCTGCATTTCACCTCGACAAGTTAAAAGGAATGATGCCAGGATTTTCAACCAGTTGCAATAGCCTCATTAATCGATGGGAAAATTTGTTGGGTTCAAAGGAAGTCATTGAAGTAGATGTCTCAGAAGAATTTCAAAATCTTGCCGGCGACATCATTTCCCGCACGGCCTTTGGCAGCAGCTTCGAAGATGGAAAGAAGATTTTCCAACTTCAAAATGAACAAGCTGTTTTGGTTCTGGAAGCATATCATGGCACATACATACCAGGTTTCAGGTACATACCTACAAAGAAAAACAAGAAGAGATACAGTATAGACAATGAGATCAAAGCTATACTACGAAACATGATCCACAGAAAAGAGGAGGCGATCAAAAAATGCACACCCGATAACGATGACCTACTGGGATTGCTGTTGAAATGCAAAGATGAAAGTGACAATGATTTGACGATGGATGAGGTGATAGAAGAGTGCAAGTTATTCTACTTTGCTGGCAAAGAGACCACCGCAAACTTGCTCACGTGGACTTTGATCCTCTTATCAATACATTCAGATTGGCAAGACAAGGCAAGAAAGGAGGTTTTGGATGTCTGTGGAAGGAAAACACCCGATTTCGAAACCATTGGCCGTCTCAAAATTGTATCATTGATACTTAATGAAGTTCTAAGACTATATCCACCTGTGACTGCTTTATTTCGCCATACCAGACGGGAAACCATCATAGGAGGAATGTCCATTCCGGCAGGCGTTGATTTTTACCTGCCCATTCTTTTGCTTCATCACGACAGAGAGTATTGGGGTGAAAACGCAGAAGAATTTGATCCCGAAAGATTCAGCCAAGGCATTTCAAAAGCATCGATAGATCGAAACACCTTTTACCCTTTCGGATGGGGTCCAAGAATTTGTCTAGGCCAAAATTTTGCCATGATTGAAGCAAAGATGGCTCTGGCTCTTGTTCTTCAACACTTTCGTTTTGAGCTTTCCCCTGCTTACCTTCATGCGCCCTTTGTTGTCATCACTCTTCAGCCTCAACATGGAGCTCCTATTTTACTGCACAGACTTTCCTAA 1533 42.2 MEEYMARTICLSVVSLILFLISMLAHSIWWRPKTLEKHLRNQGIKGTAFKPGGDKDEMNNSYEKAWSKPMNLNHNIAPRVLPFFYEMIQTYGKVSFSWFDNKPRLVIGDTELMRLILADKRGHFVKPPLNPLVELLQLGVSTLEGEKWAKRRRLMTPAFHLDKLKGMMPGFSTSCNSLINRWENLLGSKEVIEVDVSEEFQNLAGDIISRTAFGSSFEDGKKIFQLQNEQAVLVLEAYHGTYIPGFRYIPTKKNKKRYSIDNEIKAILRNMIHRKEEAIKKCTPDNDDLLGLLLKCKDESDNDLTMDEVIEECKLFYFAGKETTANLLTWTLILLSIHSDWQDKARKEVLDVCGRKTPDFETIGRLKIVSLILNEVLRLYPPVTALFRHTRRETIIGGMSIPAGVDFYLPILLLHHDREYWGENAEEFDPERFSQGISKASIDRNTFYPFGWGPRICLGQNFAMIEAKMALALVLQHFRFELSPAYLHAPFVVITLQPQHGAPILLHRLS 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1111279 1113167 - Bda016066.1 Bda03g00127 3386

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00127 510 Gene3D Cytochrome P450 70 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 PRINTS E-class P450 group I signature 203 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 506 - -
Bda03g00127 510 SUPERFAMILY Cytochrome P450 77 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00127 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Bda03g00127 510 PANTHER CYTOCHROME P450 72A15-LIKE 1 506 - -
Bda03g00127 510 Pfam Cytochrome P450 83 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00127 - - - twl:120005159 690.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00127 Bda-Chr3:1111279 Bda03g00255 Bda-Chr3:2285857 1.94E-142 dispersed
Bda01g01864 Bda-Chr1:54745250 Bda03g00127 Bda-Chr3:1111279 6.13E-138 transposed
Bda02g00461 Bda-Chr2:45385013 Bda03g00127 Bda-Chr3:1111279 1.23E-147 transposed
Bda03g00181 Bda-Chr3:1461476 Bda03g00127 Bda-Chr3:1111279 0 transposed
Bda03g00888 Bda-Chr3:7664239 Bda03g00127 Bda-Chr3:1111279 1.86E-152 transposed
Bda09g00565 Bda-Chr9:7653485 Bda03g00127 Bda-Chr3:1111279 5.48E-155 transposed
Bda02g00373 Bda-Chr2:44120300 Bda03g00127 Bda-Chr3:1111279 1.74E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g158 Blo01g01555 . . Bda03g00127 . . Bma04g00114 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000139 5 6 8 7 5 3 1 6 3 7 6 6 4 7 7 8 6 11 1 7 4 7 6 8 8 7 6 10 9 22 201
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00127 Bda_Chr03 FPKM 7.920131 8.755639 4.41844 5.490529 3.729816 4.709062 3.870897 6.448669 6.083674