Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00130 ATGGAACGTACCAAGTACGAAGCTTCAGAAGCTGGCGAAATAACCTTGTCGGCAAAGAAAACGGCGAACAGAGGCGAAGTGGTAGTAGAGATTCCGACAGAAATAGAGATTTCTTCGAAGCCTATAATAGAGTCTGAAAAGGCAAACCAGTCTCCATCAAAACCCAGAGAAGAACCTAGTATAGATTCTCCTTCCCGAGCATCAACAGAGTTAAGCCCTCATTTAACAAAGCCGATGATGATTAGCTCCAGTTCGCCAGAGCAGTCTAGGTACCCTCCGAGCTCGAATAAACCTCCGAAGATTCCTGACTGCAATGAAACAATTATCCGAAAAAGGTCCCTGTCAAGGTCTGTCTACTCTAAACCAAAATCAAGATTTGGGGAAGAACCTTATCGTATTAATTCCAACATGTTTGAAGAAAATTATGTAACCTCGCATGAACGAGTTGGTGCCAATTACCCGCATGGACACTCCTTTAACCAGACTTCCCCTGGTAACAAATCTCAACCCACTGCAGTAACCCCAAAAACACCATTAATGGCCTCCTCAGACCTTCTGAATGAGTACGAGGATGAGGAGGAGATATTCAAGAAAGTCGAGTTGAATAAAGAGAAGCACAAGCGACTGAAACTGAAGATTATAGTTGAATGGGTTGGAGTTTTATTCATTGTGAGTTGCTTAATAGCGAGCTTAACGTATCAGCCATTGAAAAGCTCAGTGTTTTGGGGTTTAGAGAGCTGGAAATGGTGTCTGTTGATAATAGTCACATTCTGTGGCCTTCTGGTTACTACTTGGTTTATGCACTTGATTGTTTTCTTGATTGAGATGAACTTTTTGCTGAGGAAGAAGGTCCTGTATTTCGTCCATGGGTTGAAGAAGACTGTCCAAGTTACCATATGGCTGGCTCTTGTTCTTCTTACATGGATGCTCTTGTTTGATCAACACGATCATAGTCTTTACCGGTCGAAAACTACCAATCTAATGTTGCACGATGCTACGATGACTCTAGCTTCTCTTCTGATTGGAGCATTTCTATGGCTTCTGAAAACTCTATTTCTGAAAGTCCTGGCTTCGAAATTTCACGTCAACCAATTTTTTGATCGAATTCAAGAAGCAATCTTTCATCAATATGTTCTGCAGACCCTCTCAGGGCCTCCTCTTATCGAGGAAGCTAAGAGGGTTGGGCGATTATCGAGCATTGGTCAGATGAGTATCAAAAGCTTGAAGAATAATGGGAAGAAACAGAAGGAGGTGATTGATATGGGAAAGCTTCACAAGATGAAGCAGGAGAAGGTTTCAGCTTGGACCATGAAAGTGTTGGTAGACGCAGTTACTAATTCCGAACTTTCTACAATTTCCCGGGCGCTGGAAGAAAGTTTCCAAGATAGAGAAGATGAGCAACTAGACAGTGAAATTACCAACGAAATGGAGGCAATTGCAGCAGCGTTTAAGATATTCAGAAATGTAGCTCGTCCTGGGAGCAAGCGCATCGAAGAGGACGATCTACTCAGATTCATGATCAAGGAAGAAGTGGAGCTTGTATTTCAATTATTTGATGGATCTGAGACGAGAAAGATAGACAAAGCATGTCTTACTAATTGGGTGGTGAAGGTTTACCAAGGGAGAAAAACTCTAGCACATGCTCTGAACGACACGAAAACGGCCGTGAAACAATTGAACAAGCTCGTGACGGGAATTGTAATTGTAGTAACCATCGTCATGTGGCTTTTATTGATAGAAATAACGACCTCAAAAGTACTTGTTTTCCTCGGTTCTCAGCTCGTCGTGGCCGTTTTCATATTCGGCAACACGTGCAAAACCATTTTCGAGGCTTTGATTTTTGTCTTCGTTATGCATCCGTTCGACGTCGGTGATCGATGCGTCATCGACGGTGATCCGATGATGGTGGAAGAAATGAACATCCTGACAACAGTTTTCTTGAAACTAAACAAGGAGAAGGTGTATTATCCAAACTCGGTATTGGCTACAAAGCCTATAGGCAATTATTTCAGGAGCCCAAACATGTCCGACTCAGTGCAATTCACGATCGATTTCATGACGCCATTAGAGAGGATCGGAGCTATGAAGGAGAAGATAAAGAGTTATTTGGAGAAAAATCCAACGCAGTGGCAACCCAGCCATAACGTGGTGGTGAAGGAGATTGAAAACGTGAATGAGATCAAGATTGCTCTGAATGTGAATCACACGATGAACTTCCAAGACTGGGTCGAGAAGAACAGGAGAAGAAGTGAGCTCGTGATGGAGTTGAAGAAGATATTCCAAGAACTGAACATCAAGTATAATCTTTTGCACCAGAGAGTTCATCTCTGCAACGTCGAAGACAACTGCTTTTCGACCCACTGA 2364 42.72 MERTKYEASEAGEITLSAKKTANRGEVVVEIPTEIEISSKPIIESEKANQSPSKPREEPSIDSPSRASTELSPHLTKPMMISSSSPEQSRYPPSSNKPPKIPDCNETIIRKRSLSRSVYSKPKSRFGEEPYRINSNMFEENYVTSHERVGANYPHGHSFNQTSPGNKSQPTAVTPKTPLMASSDLLNEYEDEEEIFKKVELNKEKHKRLKLKIIVEWVGVLFIVSCLIASLTYQPLKSSVFWGLESWKWCLLIIVTFCGLLVTTWFMHLIVFLIEMNFLLRKKVLYFVHGLKKTVQVTIWLALVLLTWMLLFDQHDHSLYRSKTTNLMLHDATMTLASLLIGAFLWLLKTLFLKVLASKFHVNQFFDRIQEAIFHQYVLQTLSGPPLIEEAKRVGRLSSIGQMSIKSLKNNGKKQKEVIDMGKLHKMKQEKVSAWTMKVLVDAVTNSELSTISRALEESFQDREDEQLDSEITNEMEAIAAAFKIFRNVARPGSKRIEEDDLLRFMIKEEVELVFQLFDGSETRKIDKACLTNWVVKVYQGRKTLAHALNDTKTAVKQLNKLVTGIVIVVTIVMWLLLIEITTSKVLVFLGSQLVVAVFIFGNTCKTIFEALIFVFVMHPFDVGDRCVIDGDPMMVEEMNILTTVFLKLNKEKVYYPNSVLATKPIGNYFRSPNMSDSVQFTIDFMTPLERIGAMKEKIKSYLEKNPTQWQPSHNVVVKEIENVNEIKIALNVNHTMNFQDWVEKNRRRSELVMELKKIFQELNIKYNLLHQRVHLCNVEDNCFSTH 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1154182 1156870 - Bda016070.1 Bda03g00130 3389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00130 787 MobiDBLite consensus disorder prediction 1 104 - -
Bda03g00130 787 Gene3D - 620 669 IPR023408 -
Bda03g00130 787 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 19 777 IPR016688 -
Bda03g00130 787 MobiDBLite consensus disorder prediction 155 174 - -
Bda03g00130 787 PIRSF Memb_At2g17000 17 785 IPR016688 -
Bda03g00130 787 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 19 777 - -
Bda03g00130 787 MobiDBLite consensus disorder prediction 43 91 - -
Bda03g00130 787 Coils Coil 189 209 - -
Bda03g00130 787 SUPERFAMILY Sm-like ribonucleoproteins 610 669 IPR010920 -
Bda03g00130 787 Pfam Mechanosensitive ion channel 561 766 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00130 Bda-Chr3:1154182 Bda09g01071 Bda-Chr9:41105653 0 dispersed
Bda02g00375 Bda-Chr2:44133660 Bda03g00130 Bda-Chr3:1154182 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00130 K22048 - pvy:116117532 916.376