Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00130 ATGGAACGTACCAAGTACGAAGCTTCAGAAGCTGGCGAAATAACCTTGTCGGCAAAGAAAACGGCGAACAGAGGCGAAGTGGTAGTAGAGATTCCGACAGAAATAGAGATTTCTTCGAAGCCTATAATAGAGTCTGAAAAGGCAAACCAGTCTCCATCAAAACCCAGAGAAGAACCTAGTATAGATTCTCCTTCCCGAGCATCAACAGAGTTAAGCCCTCATTTAACAAAGCCGATGATGATTAGCTCCAGTTCGCCAGAGCAGTCTAGGTACCCTCCGAGCTCGAATAAACCTCCGAAGATTCCTGACTGCAATGAAACAATTATCCGAAAAAGGTCCCTGTCAAGGTCTGTCTACTCTAAACCAAAATCAAGATTTGGGGAAGAACCTTATCGTATTAATTCCAACATGTTTGAAGAAAATTATGTAACCTCGCATGAACGAGTTGGTGCCAATTACCCGCATGGACACTCCTTTAACCAGACTTCCCCTGGTAACAAATCTCAACCCACTGCAGTAACCCCAAAAACACCATTAATGGCCTCCTCAGACCTTCTGAATGAGTACGAGGATGAGGAGGAGATATTCAAGAAAGTCGAGTTGAATAAAGAGAAGCACAAGCGACTGAAACTGAAGATTATAGTTGAATGGGTTGGAGTTTTATTCATTGTGAGTTGCTTAATAGCGAGCTTAACGTATCAGCCATTGAAAAGCTCAGTGTTTTGGGGTTTAGAGAGCTGGAAATGGTGTCTGTTGATAATAGTCACATTCTGTGGCCTTCTGGTTACTACTTGGTTTATGCACTTGATTGTTTTCTTGATTGAGATGAACTTTTTGCTGAGGAAGAAGGTCCTGTATTTCGTCCATGGGTTGAAGAAGACTGTCCAAGTTACCATATGGCTGGCTCTTGTTCTTCTTACATGGATGCTCTTGTTTGATCAACACGATCATAGTCTTTACCGGTCGAAAACTACCAATCTAATGTTGCACGATGCTACGATGACTCTAGCTTCTCTTCTGATTGGAGCATTTCTATGGCTTCTGAAAACTCTATTTCTGAAAGTCCTGGCTTCGAAATTTCACGTCAACCAATTTTTTGATCGAATTCAAGAAGCAATCTTTCATCAATATGTTCTGCAGACCCTCTCAGGGCCTCCTCTTATCGAGGAAGCTAAGAGGGTTGGGCGATTATCGAGCATTGGTCAGATGAGTATCAAAAGCTTGAAGAATAATGGGAAGAAACAGAAGGAGGTGATTGATATGGGAAAGCTTCACAAGATGAAGCAGGAGAAGGTTTCAGCTTGGACCATGAAAGTGTTGGTAGACGCAGTTACTAATTCCGAACTTTCTACAATTTCCCGGGCGCTGGAAGAAAGTTTCCAAGATAGAGAAGATGAGCAACTAGACAGTGAAATTACCAACGAAATGGAGGCAATTGCAGCAGCGTTTAAGATATTCAGAAATGTAGCTCGTCCTGGGAGCAAGCGCATCGAAGAGGACGATCTACTCAGATTCATGATCAAGGAAGAAGTGGAGCTTGTATTTCAATTATTTGATGGATCTGAGACGAGAAAGATAGACAAAGCATGTCTTACTAATTGGGTGGTGAAGGTTTACCAAGGGAGAAAAACTCTAGCACATGCTCTGAACGACACGAAAACGGCCGTGAAACAATTGAACAAGCTCGTGACGGGAATTGTAATTGTAGTAACCATCGTCATGTGGCTTTTATTGATAGAAATAACGACCTCAAAAGTACTTGTTTTCCTCGGTTCTCAGCTCGTCGTGGCCGTTTTCATATTCGGCAACACGTGCAAAACCATTTTCGAGGCTTTGATTTTTGTCTTCGTTATGCATCCGTTCGACGTCGGTGATCGATGCGTCATCGACGGTGATCCGATGATGGTGGAAGAAATGAACATCCTGACAACAGTTTTCTTGAAACTAAACAAGGAGAAGGTGTATTATCCAAACTCGGTATTGGCTACAAAGCCTATAGGCAATTATTTCAGGAGCCCAAACATGTCCGACTCAGTGCAATTCACGATCGATTTCATGACGCCATTAGAGAGGATCGGAGCTATGAAGGAGAAGATAAAGAGTTATTTGGAGAAAAATCCAACGCAGTGGCAACCCAGCCATAACGTGGTGGTGAAGGAGATTGAAAACGTGAATGAGATCAAGATTGCTCTGAATGTGAATCACACGATGAACTTCCAAGACTGGGTCGAGAAGAACAGGAGAAGAAGTGAGCTCGTGATGGAGTTGAAGAAGATATTCCAAGAACTGAACATCAAGTATAATCTTTTGCACCAGAGAGTTCATCTCTGCAACGTCGAAGACAACTGCTTTTCGACCCACTGA 2364 42.72 MERTKYEASEAGEITLSAKKTANRGEVVVEIPTEIEISSKPIIESEKANQSPSKPREEPSIDSPSRASTELSPHLTKPMMISSSSPEQSRYPPSSNKPPKIPDCNETIIRKRSLSRSVYSKPKSRFGEEPYRINSNMFEENYVTSHERVGANYPHGHSFNQTSPGNKSQPTAVTPKTPLMASSDLLNEYEDEEEIFKKVELNKEKHKRLKLKIIVEWVGVLFIVSCLIASLTYQPLKSSVFWGLESWKWCLLIIVTFCGLLVTTWFMHLIVFLIEMNFLLRKKVLYFVHGLKKTVQVTIWLALVLLTWMLLFDQHDHSLYRSKTTNLMLHDATMTLASLLIGAFLWLLKTLFLKVLASKFHVNQFFDRIQEAIFHQYVLQTLSGPPLIEEAKRVGRLSSIGQMSIKSLKNNGKKQKEVIDMGKLHKMKQEKVSAWTMKVLVDAVTNSELSTISRALEESFQDREDEQLDSEITNEMEAIAAAFKIFRNVARPGSKRIEEDDLLRFMIKEEVELVFQLFDGSETRKIDKACLTNWVVKVYQGRKTLAHALNDTKTAVKQLNKLVTGIVIVVTIVMWLLLIEITTSKVLVFLGSQLVVAVFIFGNTCKTIFEALIFVFVMHPFDVGDRCVIDGDPMMVEEMNILTTVFLKLNKEKVYYPNSVLATKPIGNYFRSPNMSDSVQFTIDFMTPLERIGAMKEKIKSYLEKNPTQWQPSHNVVVKEIENVNEIKIALNVNHTMNFQDWVEKNRRRSELVMELKKIFQELNIKYNLLHQRVHLCNVEDNCFSTH 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1154182 1156870 - Bda016070.1 Bda03g00130 3389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00130 787 MobiDBLite consensus disorder prediction 1 104 - -
Bda03g00130 787 Gene3D - 620 669 IPR023408 -
Bda03g00130 787 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 19 777 IPR016688 -
Bda03g00130 787 MobiDBLite consensus disorder prediction 155 174 - -
Bda03g00130 787 PIRSF Memb_At2g17000 17 785 IPR016688 -
Bda03g00130 787 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 19 777 - -
Bda03g00130 787 MobiDBLite consensus disorder prediction 43 91 - -
Bda03g00130 787 Coils Coil 189 209 - -
Bda03g00130 787 SUPERFAMILY Sm-like ribonucleoproteins 610 669 IPR010920 -
Bda03g00130 787 Pfam Mechanosensitive ion channel 561 766 IPR006685 GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00130 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - pvy:116117532 916.376
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00130 Bda-Chr3:1154182 Bda09g01071 Bda-Chr9:41105653 0 dispersed
Bda02g00375 Bda-Chr2:44133660 Bda03g00130 Bda-Chr3:1154182 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g144 Blo01g01450 Blo12g01027 . Bda03g00130 . . Bma04g00265 . . . Cma01g01705 . . . . . . . . . . . . . Cla05g01618 Cam05g1731 Cec05g1736 Cco05g1792 Clacu05g1720 Cmu05g1604 Cre05g1731 Cone4ag1693 . . . Lsi04g01394 . . . . . . . . Bpe04g00114 . . . Cmo01g01806 . . . Car01g01323 . . Cpe02g00286 Bhi09g03090 . . . . . . . . . . . . . . . . Cme07g00186
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00254 . 1 535 Mechanosensitive Ion Channel Family AT4G00290 54.9 1.0e-149 526.9
Bda04g00117 . 1 605 Mechanosensitive Ion Channel Family AT5G10490 63.3 7.8e-201 697.2
Bda01g00910 . 16 621 Mechanosensitive Ion Channel Family AT5G10490 54.2 1.3e-174 610.1
Bda13g01360 . 247 763 Mechanosensitive Ion Channel Family AT5G10490 61.4 1.1e-167 587.0
Bda01g00910 . 1 617 Mechanosensitive Ion Channel Family AT1G58200 55.3 6.3e-182 634.4
Bda04g00117 . 1 570 Mechanosensitive Ion Channel Family AT1G58200 59.0 4.4e-175 611.7
Bda13g01360 . 247 746 Mechanosensitive Ion Channel Family AT1G58200 59.9 4.5e-156 548.5
Bda06g00468 . 63 923 Mechanosensitive Ion Channel Family AT1G53470 54.9 1.7e-248 855.9
Bda14g00631 . 1 821 Mechanosensitive Ion Channel Family AT1G53470 55.4 8.3e-243 837.0
Bda06g00468 . 63 925 Mechanosensitive Ion Channel Family AT3G14810 53.2 1.9e-236 815.8
Bda14g00631 . 2 827 Mechanosensitive Ion Channel Family AT3G14810 52.7 3.0e-226 781.9
Bda06g00468 . 63 924 Mechanosensitive Ion Channel Family AT1G78610 60.4 2.2e-280 961.8
Bda14g00631 . 10 826 Mechanosensitive Ion Channel Family AT1G78610 57.5 5.6e-260 894.0
Bda06g00468 . 221 920 Mechanosensitive Ion Channel Family AT2G17000 58.9 5.7e-225 777.7
Bda14g00631 . 142 820 Mechanosensitive Ion Channel Family AT2G17000 58.5 8.2e-224 773.9
Bda14g00631 . 116 566 Mechanosensitive Ion Channel Family AT2G17010 60.8 1.0e-144 510.8
Bda03g00130 . 55 776 Mechanosensitive Ion Channel Family AT5G19520 51.4 2.3e-193 672.5
Bda03g00130 . 61 776 Mechanosensitive Ion Channel Family AT5G12080 56.0 1.0e-214 743.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00130 Bda_Chr03 FPKM 34.635723 31.734291 11.048097 10.432332 25.123573 27.145308 26.1919 8.913745 10.108892