Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00153 ATGGAGGAATTCAACCAGCTAAGCGAGAACTCAAATCACAGGGGAAGTTTCTTTTACACCTCGGCTCTTCTTGCAGGCAATTCTTCTCCTTCTAATCATGGAAGATCAACAACAGGAGGCTCTAGGCAAACACAAATAGCCATTAATAACTTTCACGGCGACTGCTTTCAGCCTGATCCTATCGTTAAAACGGAAGCTTTCACTTCGATGCACCGTGATCAAAAACTTTATCGTCCACTGATAGGAAGCCATCAAAGTTCTATTCAAAGGACCGATGAAGGCTCAAATGATGTTGAGGCGATTAAGTCTAAGATCTCTGCCCATCCCCAGTATTCTAACCTCTTGAAAGCTTATATGGATTGCCAAAAGGTGGGAGCTCCGCCAGAAGTGGCGGCTAGTCTAACTGAGGCTCGCCGGCAGTTTGAAGCCCGTCAGCGAACTGCGTCAAGAGATAATACGAAGGATCCCGAACTTGATCAGTTCATGGAAGCATATTACGATATGCTGGTGAAATATCGTGAAGAGATTACGAGGCCCATTCAAGAAGCAACGGATTTCATGCATCGGATTGAATCTCAACTCTATGCGCTTTGCAATGGCCCAATCCGGATCTTCACCTCCGATGAAAAATGCCAAGGCAATGGGTCATCGGAGGACGATCAGGACAACAGCGGAGGGGATACAGAACTCCCGGAGATGGATCTGAGGGCGGAAGATCGAGAACTGAAGAATCAGCTTCTAAGGAAGTACAGTGGCTATTTAAGCAGTCTGAAGCAAGAACTGTCGAAGAAAAAAAAGAAAGGAAAGCTACCCAAAGATGCAAGGCAAAAGCTACTGAACTGGTGGGAGCTGCATTACAAATGGCCATATCCGTCGGAGACGGAGAAGGCGGCGCTGGCCGAGTTGACCGGGCTGGACCAGAAACAAATCAACAACTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCTTCAGAAGACGTGCAATTTATGGTCATGGATGGACTTTATCCTCCCAATGGAGTGCTCTGTATGGACTCCCACTACATGGCTAATGCCCATTATCGCCTCGGACCTTGA 1080 46.94 MEEFNQLSENSNHRGSFFYTSALLAGNSSPSNHGRSTTGGSRQTQIAINNFHGDCFQPDPIVKTEAFTSMHRDQKLYRPLIGSHQSSIQRTDEGSNDVEAIKSKISAHPQYSNLLKAYMDCQKVGAPPEVAASLTEARRQFEARQRTASRDNTKDPELDQFMEAYYDMLVKYREEITRPIQEATDFMHRIESQLYALCNGPIRIFTSDEKCQGNGSSEDDQDNSGGDTELPEMDLRAEDRELKNQLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSETEKAALAELTGLDQKQINNWFINQRKRHWKPSEDVQFMVMDGLYPPNGVLCMDSHYMANAHYRLGP 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1277899 1279982 + Bda016095.1 Bda03g00153 3412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00153 359 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 349 - -
Bda03g00153 359 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 349 - -
Bda03g00153 359 ProSitePatterns 'Homeobox' domain signature. 299 322 IPR017970 GO:0000981|GO:0006355
Bda03g00153 359 SUPERFAMILY Homeodomain-like 262 337 IPR009057 -
Bda03g00153 359 Pfam KNOX2 domain 154 198 IPR005541 GO:0003677|GO:0005634
Bda03g00153 359 Gene3D - 266 328 - -
Bda03g00153 359 SMART KNOX2_2 148 199 IPR005541 GO:0003677|GO:0005634
Bda03g00153 359 Pfam Homeobox KN domain 281 320 IPR008422 GO:0003677|GO:0006355
Bda03g00153 359 SMART ELK_2 241 262 IPR005539 GO:0003677
Bda03g00153 359 SMART KNOX1_2 99 143 IPR005540 GO:0003677|GO:0005634
Bda03g00153 359 ProSiteProfiles 'Homeobox' domain profile. 261 324 IPR001356 GO:0003677
Bda03g00153 359 MobiDBLite consensus disorder prediction 208 232 - -
Bda03g00153 359 SMART HOX_1 263 328 IPR001356 GO:0003677
Bda03g00153 359 Pfam ELK domain 241 262 IPR005539 GO:0003677
Bda03g00153 359 CDD homeodomain 273 325 IPR001356 GO:0003677
Bda03g00153 359 Pfam KNOX1 domain 100 142 IPR005540 GO:0003677|GO:0005634
Bda03g00153 359 ProSiteProfiles ELK domain profile. 241 261 IPR005539 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00605 Bda03g00153 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00153 Bda-Chr3:1277899 Bda15g00550 Bda-Chr15:8647777 3.54E-87 dispersed
Bda01g00605 Bda-Chr1:33054749 Bda03g00153 Bda-Chr3:1277899 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15611 PF03791 KNOX2 5.80E-23 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00153 - - vvi:100255834 506.138