Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00158 ATGACAATTCCATCATTCGCGGATCGGAAGTATCGTCGAAGCCCAAGAAAGGCCCTTCTACCTGAGAAACACGATGACTATGAGTTTCTCCACGACGGTTTCGATGGCGCCTCGTATTCCGGTGCCGTTTTCAACCTATCCACCACCATAGTGGGCGCCGGAATCATGGCTCTCCCTGCCGCTGTCAAACAGTTGGGCCTTATACCTGGCCTGGTGATGATCGTGATGGTATCGATGTTGACGGAGTTCTCCATCGATATGATTCTCAAATTCACTCGTGCTTCCAAATCCTCAACGTATTCCGGTGTCGTCCAAGACGCTTTTGGTGGAGTCGGGCGAACGCTCTTGCAGGTCTGCATTGTGGTCAATAACTTTGGAATGCTCGTGGTCTACATGATCATAATCGGTGATGTGCTATCTGGAACACGGTTTGAGGGCGTTCACCAGGCTGGTGTAATAGAAGAATGGTTTGGTCAGCGTTGGTGGACAACACGCTCTTCCTTACTTCTTTTCACCACTCTTCTAATATTTGTTCCTCTCATATCATTTAAACGCGTAGATTCGCTGAGATACACGTCGGCACTGTCAGTTGGTTTGGCTATTGTATTTGTGGCAATTACAGCTGGAGTCTCAATCACTAAATTGTTGAATGGGAGCTTAGGAATGCCGCGACTGATGCCTGAACTTGTGGATCAAGCATCATTTTGGAAGCTTTTCACCACAATACCTGTTCTAGTCACTGCATATATCTGCCACCACAATGTTCACCCCATTGAAAATGAACTAAATGATCCCACAAAAATGAAATCCATAGTTCGCACGTCAATCACATTATGCGCGGCTGTTTACATTGCAACTAGCTTCTTTGGGGTGCTCCTCTTTGGGGATCAAACGCTGGATGATATACTTGCCAATTTTGATGGTGATCTTGGAGTGCCATATAGCATATTACTGAATGATGTTGTTAGGGTCAGCTATGGCATCCACTTGATGCTTGTCTTTCCAATTGTATTTTATTCTCTTCGGCTCAACCTCGATGGTCTTCTTTTTCCTTATGCTATTCCCCTTACTTTTGACAACCAAAGATTTTATTCAGTTACAGCAGCTCTTATGGCCTTTATCTTTGTGGCGGCCAATTTCATACGGAGCATCTGGGATGCTTTTCAGTTCACTGGTGCCACAGCTGCTATATCTGTCGCTTTCATCTTCCCAGCTGCTATAGTACTTAGGGATAGCCGTGGAATTGCAACAAAGAAAGATTCATTTGCATCATGGGCTATGCTTATATTAGCTGTTTCGTCTAGCATCGCCGCCATCTCTTCTGACCTTTACAACACGTTCAGTAGGGAGGAAAGATATGAAAGATGA 1368 45.1 MTIPSFADRKYRRSPRKALLPEKHDDYEFLHDGFDGASYSGAVFNLSTTIVGAGIMALPAAVKQLGLIPGLVMIVMVSMLTEFSIDMILKFTRASKSSTYSGVVQDAFGGVGRTLLQVCIVVNNFGMLVVYMIIIGDVLSGTRFEGVHQAGVIEEWFGQRWWTTRSSLLLFTTLLIFVPLISFKRVDSLRYTSALSVGLAIVFVAITAGVSITKLLNGSLGMPRLMPELVDQASFWKLFTTIPVLVTAYICHHNVHPIENELNDPTKMKSIVRTSITLCAAVYIATSFFGVLLFGDQTLDDILANFDGDLGVPYSILLNDVVRVSYGIHLMLVFPIVFYSLRLNLDGLLFPYAIPLTFDNQRFYSVTAALMAFIFVAANFIRSIWDAFQFTGATAAISVAFIFPAAIVLRDSRGIATKKDSFASWAMLILAVSSSIAAISSDLYNTFSREERYER 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1308401 1311847 + Bda016100.1 Bda03g00158 3417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00158 455 Pfam Transmembrane amino acid transporter protein 38 425 IPR013057 -
Bda03g00158 455 PANTHER AMINO ACID TRANSPORTER AVT6A 12 451 - -
Bda03g00158 455 PANTHER AMINO ACID TRANSPORTER 12 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00158 K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2 - zju:107420633 699.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00158 Bda-Chr3:1308401 Bda13g01748 Bda-Chr13:40826627 0 dispersed
Bda03g00158 Bda-Chr3:1308401 Bda13g01737 Bda-Chr13:40691591 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g01124 . 1 306 Amino Acid/Auxin Permease AAAP Family AT5G16740 61.4 3.0e-97 352.4
Bda03g00788 . 48 197 Amino Acid/Auxin Permease AAAP Family AT5G02170 68.0 7.8e-54 208.4
Bda05g01021 . 45 476 Amino Acid/Auxin Permease AAAP Family AT2G41190 67.1 7.3e-159 557.4
Bda13g01737 . 24 461 Amino Acid/Auxin Permease AAAP Family AT3G30390 74.0 1.5e-182 636.0
Bda13g01748 . 24 456 Amino Acid/Auxin Permease AAAP Family AT3G30390 73.2 3.7e-178 621.3
Bda07g01045 . 1 348 Amino Acid/Auxin Permease AAAP Family AT3G30390 76.1 3.6e-149 525.0
Bda03g00158 . 19 454 Amino Acid/Auxin Permease AAAP Family AT3G30390 58.7 7.1e-145 510.8
Bda01g01214 . 29 432 Amino Acid/Auxin Permease AAAP Family AT3G28960 60.4 8.2e-137 483.8
Bda01g01233 . 29 432 Amino Acid/Auxin Permease AAAP Family AT3G28960 60.1 1.2e-135 479.9
Bda01g02153 . 17 405 Amino Acid/Auxin Permease AAAP Family AT3G28960 51.9 1.8e-107 386.3
Bda01g02151 . 4 405 Amino Acid/Auxin Permease AAAP Family AT3G28960 50.2 8.8e-107 384.0
Bda01g02172 . 17 404 Amino Acid/Auxin Permease AAAP Family AT3G28960 51.9 4.9e-105 378.3
Bda13g01737 . 19 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 69.8 1.3e-175 612.8
Bda13g01748 . 19 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 68.6 2.6e-171 598.6
Bda07g01045 . 1 346 Amino Acid/Auxin Permease AAAP Family AT5G38820 71.8 5.1e-143 504.6
Bda03g00158 . 34 449 Amino Acid/Auxin Permease AAAP Family AT5G38820 58.9 1.2e-141 500.0
Bda05g00505 . 1 496 Amino Acid/Auxin Permease AAAP Family AT1G80510 71.6 7.7e-190 660.2
Bda05g00518 . 1 496 Amino Acid/Auxin Permease AAAP Family AT1G80510 71.2 2.9e-189 658.3
Bda03g00788 . 17 197 Amino Acid/Auxin Permease AAAP Family AT5G02180 59.9 1.2e-58 224.6
Bda03g00788 . 3 197 Amino Acid/Auxin Permease AAAP Family AT3G09330 61.0 2.5e-61 233.4
Bda03g00788 . 3 197 Amino Acid/Auxin Permease AAAP Family AT3G09340 60.5 1.9e-61 233.8
Bda15g00390 . 1 248 Amino Acid/Auxin Permease AAAP Family AT2G39130 61.7 4.2e-74 275.8
Bda01g01214 . 97 432 Amino Acid/Auxin Permease AAAP Family AT5G15240 61.7 7.4e-107 384.0
Bda01g01233 . 97 432 Amino Acid/Auxin Permease AAAP Family AT5G15240 61.1 1.4e-105 379.8
Bda14g00218 . 1 435 Amino Acid/Auxin Permease AAAP Family AT3G56200 61.4 1.3e-140 496.5
Bda15g00390 . 1 249 Amino Acid/Auxin Permease AAAP Family AT3G54830 54.3 5.2e-62 235.7
Bda03g00788 . 3 197 Amino Acid/Auxin Permease AAAP Family AT3G54830 52.3 4.7e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00158 Bda_Chr03 FPKM 19.428442 24.434994 15.020507 13.065269 17.859411 15.44437 18.037178 14.406644 11.427787