Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00159 ATGGCGCCGTCGTTCGATTGGTGGACGAAAGAGAGCCACAGAGGAACCCCCGTCGTGGTTAAGATGGAGAATCCTAACTGGTCCATGGTCGAACTCGAAGGTCCATCAGAAGATTACTTTCTCATCGCAGAATCGCCGGTCGGAGTACGAGAAAAAGGCCGAGGTAAAAACGCTAAACAGCTTACTTGGGTTCTTCTCCTCAAAGCCCACAAAGCCGCCGGTTGTTTAACCTCCATTGGCTCTGCATTTGTCGGACTCACCGCCGCAGTTAGACGGCGCGTCGCTTCGGGTAGAACTGACGCCGATGCCGACAACGAAAACGACAACGACATTGATTGTAGCCGGGAGAAAGAAAACCCTTCATTGAAAACCAGGTTTTATTCTTGCATCAAAGTTTTTCTTCTTCTGTCGGTGCTTCTTCTAGGGTTTGAGGTTGCTGCCTACTTCAAAGGGTGGCATTTTAGCACTCCCCATCTTCAATTGAGTTATTTGTGGGCAACTCCTTTTGGGGTAAAAGGAACTTTCGACTGGATTTATTCTCAATGGGTCTTATTTCGGGTGGATTATCTTGCTCCTCCTCTCCAGTTCTTAGCCAATGCTTGCATTATCCTCTTCCTCATTCAGAGTTTAGACAGGCTAATTTTGTGTATGGGTTGTTTCTGGATTCGATTCAAGAAGATAAAACCAGCTCCGAAAGAAGCCCCCACCGACGACATTGAATCTGGCGAGAAGGGCTATTTTCCCATGGTTCTTGTTCAGATCCCCATGTGCAACGAAAAGGAGGTATATATTATAAACCTTTCTGTTTTAATTCATTTTCTTCAAATTACTGTAATAATTTTGGAAGCCTGTGTGTATCAGGTTTATCAACAATCAATTGCTGCTGTTTGCAATTTAGACTGGCCAAAATCAAAGCTTCTTATTCAGGTTCTCGACGATTCAGATGACCCAATCACTCAAGTGCTGATCAGAGAAGAGGTCCAAAAATGGCAGCAAGAAGGGGCCAACATTGTGTATAGGCATAGGGTAATTAGAGATGGGTATAAGGCTGGTAATCTCAAGTCTGCAATGAACTGTAGCTACGTTAAAGATTATGAATTCGTTGCCATTTTCGATGCTGATTTTCAGCCAACCCCTGATTTCCTTAAAAGAACAGTCCCTCATTTCCAGGATAATGAAGAACTGGGTCTGGTTCAAGCAAGGTGGTCTTTTGTGAACAAGGATGAGAACTTGCTTACAAGGCTGCAGAATATCAATTTAGCATTCCACTTCGAGGTGGAACAGCAAGTTAATGGCGTTTTCCTTAATTTCTTCGGGTTCAATGGGACGGCGGGAGTATGGAGGATTAAGGCTCTGGAAGATTCTGGTGGGTGGTTGGAGAGAACCACCGTCGAGGACATGGATATTGCTGTCCGAGCTCATCTTCACGGATGGAAATTCATCTTCCTCAACGATGTAGAGTGCCAGTGTGAATTGCCGGAATCTTACGAAGCTTATCGGAAACAACAGCATCGATGGCATTCCGGGCCAATGCAATTGTTTCGCCTTTGTTTGCCGGCTATAGTTCGATCCAAGATAAGCGTGTGGAAGAAATTCAATATGATCTTTCTATTCTTTCTTCTAAGGAAGCTAATTCTACCATTCTATTCTTTCACTCTCTTCTGCATAATTCTTCCTATGACCATGTTTATTCCTGAGGCTGAGCTACCAGCTTGGGTTGTCTGCTACATTCCTGCAACAATGTCATTTCTTAACATTCTCCCTGCACCAAAGTCCTTCCCCTTTATCGTCCCTTATCTTCTTTTTGAGAACACCATGTCTGTAACTAAGTTCAATGCGATGATCTCTGGTTTGTTTCAGCTGGGCAGTGCTTATGAATGGGTAGTTACTAAGAAATCCGGTAGATCATCCGAGGGTGATCTGGTTTCCTTGATTGAAAAAGAATCGACTCATCAAAGAGGGTCATCAGCTCCTAATCTGGAGGAATTGAAGGAAGAGATTCAAAAGCAGGAGCAGCAAGCTTTGCCGAAGAAGAAGAAGAAGAAGAAACACAATAGAATATACAGGAAAGAGCTGGCTTTAGCTTTTCTTCTTCTAACAGCATCAGCCCGAAGCCTCCTCTCGGCCCAGGGCATCCATTTTTACTTCTTGTTGTTTCAGGGGATCTCTTTTCTTTTGGTGGGTTTGGATCTGATCGGAGAGCAGGTGGAGTGA 2214 44.26 MAPSFDWWTKESHRGTPVVVKMENPNWSMVELEGPSEDYFLIAESPVGVREKGRGKNAKQLTWVLLLKAHKAAGCLTSIGSAFVGLTAAVRRRVASGRTDADADNENDNDIDCSREKENPSLKTRFYSCIKVFLLLSVLLLGFEVAAYFKGWHFSTPHLQLSYLWATPFGVKGTFDWIYSQWVLFRVDYLAPPLQFLANACIILFLIQSLDRLILCMGCFWIRFKKIKPAPKEAPTDDIESGEKGYFPMVLVQIPMCNEKEVYIINLSVLIHFLQITVIILEACVYQVYQQSIAAVCNLDWPKSKLLIQVLDDSDDPITQVLIREEVQKWQQEGANIVYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFQDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEDSGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIVRSKISVWKKFNMIFLFFLLRKLILPFYSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLIEKESTHQRGSSAPNLEELKEEIQKQEQQALPKKKKKKKHNRIYRKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVE 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1314886 1317379 + Bda016101.1 Bda03g00159 3418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00159 737 Pfam Glycosyl transferase family group 2 368 562 IPR001173 -
Bda03g00159 737 SUPERFAMILY Nucleotide-diphospho-sugar transferases 290 553 IPR029044 -
Bda03g00159 737 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 274 491 IPR029044 -
Bda03g00159 737 Coils Coil 660 680 - -
Bda03g00159 737 PANTHER - 279 736 - -
Bda03g00159 737 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 279 736 - -
Bda03g00159 737 PANTHER - 6 266 - -
Bda03g00159 737 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 6 266 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00159 - - - zju:107420618 1214.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00601 Bda03g00159 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00159 Bda-Chr3:1314886 Bda11g00885 Bda-Chr11:8689933 0 dispersed
Bda01g00601 Bda-Chr1:33011384 Bda03g00159 Bda-Chr3:1314886 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g5 . Blo12g01057 . Bda03g00159 . . . . Cmo05g00120 . . . . Car12g00229 Sed09g1609 Cpe07g00209 . Bhi04g00862 Tan02g2553 Cmetu03g1333 . Hepe10g0373 . Lcy13g1421 . . . . . . . . Cone7ag1308 . . . . . . . . . . . Bpe04g00141 . . . . . . Cma12g00246 . . . . Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . Cla08g01215 Cam08g1676 Cec08g1254 Cco08g1373 Clacu08g1374 . Cre08g1159 . Csa02g02262 . .
Vvi4g659 . Blo12g00999 . Bda03g00159 . Bpe02g00225 . Bma01g02228 . . Cma01g01581 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04414 Chy04g00287 . . . . . . Bpe04g00141 . . Sed13g2106 . . Cma09g00534 . . . . . Bhi09g02382 Tan01g3749 Cmetu04g0694 . Hepe01g2097 Mch11g0635 . . . . . . . . . . . Cme04g00326
Vvi18g605 Blo01g01484 Blo12g00794 Bda01g00601 Bda03g00159 Bpe02g00467 Bpe04g00141 . Bma01g02228 . Cmo12g00551 Cma01g01758 Cma09g00311 Car01g01374 Car12g00556 Sed10g1150 Cpe06g00220 Cpe07g00533 Bhi04g00461 Tan02g1687 Cmetu03g1896 . Hepe08g1357 . Lcy13g2156 Cla08g01643 Cam08g2147 Cec08g1735 Cco08g1854 Clacu08g1835 . Cre08g1618 Cone4ag1635 Cone7ag1317 Cone17ag0903 Cone20ag0246 Lsi04g01454 Csa04g02506 . Cme03g02127 . . . . . . . . Sed11g1870 Cmo01g01821 Cmo09g00311 Cma12g00615 . . Car09g00263 . Cpe02g00240 Bhi09g03190 Tan01g4659 Cmetu07g2267 . Hepe01g1852 Mch11g0387 . . . . . . . . Lsi08g01551 Csa02g01868 Chy07g00213 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00024 . 711 871 REM Transcription Factor Family AT1G49480 68.3 2.0e-55 212.6
Bda11g00885 . 1 690 REM Transcription Factor Family AT2G24630 76.9 0.0e+00 1077.4
Bda01g00601 BCT 1 706 REM Transcription Factor Family AT2G24630 64.7 3.7e-262 901.0
Bda03g00159 BCT 1 737 REM Transcription Factor Family AT2G24630 62.6 6.9e-261 896.7
Bda10g00519 . 5 710 REM Transcription Factor Family AT2G24630 60.7 3.0e-240 828.2
Bda04g00504 . 1 537 REM Transcription Factor Family AT2G24630 71.9 5.9e-228 787.3
Bda03g00382 . 1 190 REM Transcription Factor Family AT2G24630 91.1 2.5e-101 366.7
Bda11g00885 . 1 690 REM Transcription Factor Family AT2G24630 76.9 0.0e+00 1077.4
Bda01g00601 BCT 1 706 REM Transcription Factor Family AT2G24630 64.7 3.7e-262 901.0
Bda03g00159 BCT 1 737 REM Transcription Factor Family AT2G24630 62.6 6.9e-261 896.7
Bda10g00519 . 5 710 REM Transcription Factor Family AT2G24630 60.7 3.0e-240 828.2
Bda04g00504 . 1 537 REM Transcription Factor Family AT2G24630 71.9 5.9e-228 787.3
Bda03g00382 . 1 190 REM Transcription Factor Family AT2G24630 91.1 2.5e-101 366.7
Bda11g00885 . 1 690 REM Transcription Factor Family AT2G24630 76.9 0.0e+00 1077.4
Bda01g00601 BCT 1 706 REM Transcription Factor Family AT2G24630 64.7 3.7e-262 901.0
Bda03g00159 BCT 1 737 REM Transcription Factor Family AT2G24630 62.6 6.9e-261 896.7
Bda10g00519 . 5 710 REM Transcription Factor Family AT2G24630 60.7 3.0e-240 828.2
Bda04g00504 . 1 537 REM Transcription Factor Family AT2G24630 71.9 5.9e-228 787.3
Bda03g00382 . 1 190 REM Transcription Factor Family AT2G24630 91.1 2.5e-101 366.7
Bda15g00024 . 711 871 REM Transcription Factor Family AT1G49480 68.3 2.0e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002112 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 2 2 2 2 2 2 2 2 2 3 2 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00159 Bda_Chr03 FPKM 7.908848 8.101477 23.505848 23.96283 24.829905 24.443941 27.680815 15.54643 15.280445