Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00160 ATGAAGCCCAGTGATGATGTCAAAAATGGTGGCAACAATGATAATAAGAGCTGGTTGGGTTTTTCTCTGTCACCACATATGAAAATGGAGGAGAACAGTTCCGCGTCCGTCTCCAATGCTTATCCAGCTAGCTTCTACTCCTACCCTCATTTCAACAGCTCCACATTCGGCTACGAGATTGGCGGACATGGCGGTTTCCACCCTCCACTGCCTCTCAAGCTAGACGGGTCTCTTTCAATCATGGAAGCTCTTACCAGATCACAGCCCGAAGGAATGGTTCTGAATTCCTCGCCGAAGCTGGAGGATTTTTTCGGAGGTGCAAGCTTAGGAACACTTGCAAACGAGTACAGAAGCCATGGAAGAGAAGGAAGCTTTTATAATCAAAACTACCAATCTGAAACAGAGAGGGAAGTTTCTTTCGATCTGCTTCAACAGCCATACGGGCAACAAGAGAGCCACATTCCAGTTCATTCTCATCCGTACATTTCAGGAATCCCCCGCCACGGGTTATCCAATCCGTCGGAGGAGGAATCGAAGCTCAATATTTCCAACTGGGTGGCCCGTCATTACTCCGGAAACCAACCTCTGGAGCAGCATTTAAGCACCGGGATTATTGAAGTCGGAGCTTCTTCTGGGTCTGTTGGTCCGATGGGCTGCGGAAATTTGCAGTCGCTTAGTCTGTCTATGAGCCCGGGCTCACAGTCAAGCTGCGTTACAGCTCCTGCCCAGATCTCACCTGCTGATGTAGAATGTGCAGACATTGAAACGAAGAAAAGAGTTTCTACGAAGATGGGTCAGAAGCAGCCTGTACATAGGAAGTCCATTGATACTTTTGGACAAAGAACATCGCAGTACAGAGGCGTTACGAGGTTTTGTGTCAGACATAGGTGGACGGGAAGGTATGAAGCTCATTTATGGGATAACAGTTGCAAGAAGGAAGGACAAACCAGAAAGGGAAGACAAGGCGGCTACGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCTTGCGGCTCTCAAGTACTGGGGACCATCAACGCACATAAACTTTCCGCTGGAGAATTATCATACTCAACTAGAAGAAATGAAGAACATGAGCCGCCAGGAATATGTAGCTCATCTGAGAAGGAAGAGCAGTGGATTTTCTAGGGGAGCTTCAATGTACAGAGGAGTAACGAGATCACTTAGATTTAGTCTGTCAGCTCGTTTTTGTTTGGAGTTTTTCAGGCATCACCAGCATGGAAGATGGCAAGCTCGGATTGGCCGTGTTGCGGGAAACAAAGATCTTTATCTTGGAACATTTAGCACCCAGGAGGAAGCTGCTGAAGCTTACGACATTGCGGCGATAAAGTTCCGAGGCGTAAATGCCGTTACCAACTTTGACATTTCACGATATGATGTCGAAAAAATCATAGCTAGTAGTACTCTACTTGCCGGCGAATATGCTCGACGGAACAAAACAAGGGAACCGACCCAAATCATAGATCACAAACCTCAAGTGCAAGAAAGTGATGAAATCAATCTCTCTGATAAGTCCAATGGAAATGGAGGAACTCATTGGCGGACAGAATCCTCGAATAATAACATGATGAACTTGGCCAATGAGCCAATGGGCATTGAAACTGTCCGCTCGACTGATCCCGTGATTGGCCAATCGACAAAGCTGGGGCCGCCATTTCCTATCCCCGCACCAATTCCTAGCAGTTTGAGCTGCGCAAGGGGCACCAACGCAGATAAAACCAGCCCAATGCTGTTTGCAAAGCCTCCATTGGCATGGCTGCCCACAGCACAGCTGAGGTCTCCTGTTATTTCCATGTCTCAGTTGCCTGTTTTTGCAGCCTGGAATGACGCCTAA 1854 47.52 MKPSDDVKNGGNNDNKSWLGFSLSPHMKMEENSSASVSNAYPASFYSYPHFNSSTFGYEIGGHGGFHPPLPLKLDGSLSIMEALTRSQPEGMVLNSSPKLEDFFGGASLGTLANEYRSHGREGSFYNQNYQSETEREVSFDLLQQPYGQQESHIPVHSHPYISGIPRHGLSNPSEEESKLNISNWVARHYSGNQPLEQHLSTGIIEVGASSGSVGPMGCGNLQSLSLSMSPGSQSSCVTAPAQISPADVECADIETKKRVSTKMGQKQPVHRKSIDTFGQRTSQYRGVTRFCVRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYHTQLEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRSLRFSLSARFCLEFFRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIIASSTLLAGEYARRNKTREPTQIIDHKPQVQESDEINLSDKSNGNGGTHWRTESSNNNMMNLANEPMGIETVRSTDPVIGQSTKLGPPFPIPAPIPSSLSCARGTNADKTSPMLFAKPPLAWLPTAQLRSPVISMSQLPVFAAWNDA 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1319585 1322070 - Bda016102.2 Bda03g00160 3419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00160 617 CDD AP2 283 351 IPR001471 GO:0003700|GO:0006355
Bda03g00160 617 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 615 - -
Bda03g00160 617 Pfam AP2 domain 409 453 IPR001471 GO:0003700|GO:0006355
Bda03g00160 617 Pfam AP2 domain 285 343 IPR001471 GO:0003700|GO:0006355
Bda03g00160 617 MobiDBLite consensus disorder prediction 501 527 - -
Bda03g00160 617 CDD AP2 386 463 IPR001471 GO:0003700|GO:0006355
Bda03g00160 617 ProSiteProfiles AP2/ERF domain profile. 284 351 IPR001471 GO:0003700|GO:0006355
Bda03g00160 617 SMART rav1_2 408 467 IPR001471 GO:0003700|GO:0006355
Bda03g00160 617 SMART rav1_2 284 357 IPR001471 GO:0003700|GO:0006355
Bda03g00160 617 SUPERFAMILY DNA-binding domain 409 463 IPR016177 GO:0003677
Bda03g00160 617 ProSiteProfiles AP2/ERF domain profile. 387 461 IPR001471 GO:0003700|GO:0006355
Bda03g00160 617 Gene3D AP2/ERF domain 283 353 IPR036955 GO:0003700|GO:0006355
Bda03g00160 617 Gene3D AP2/ERF domain 387 463 IPR036955 GO:0003700|GO:0006355
Bda03g00160 617 MobiDBLite consensus disorder prediction 505 527 - -
Bda03g00160 617 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 615 - -
Bda03g00160 617 SUPERFAMILY DNA-binding domain 284 353 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00600 Bda03g00160 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda10g00763 Bda-Chr10:42073745 Bda03g00160 Bda-Chr3:1319585 2.24E-76 dispersed
Bda13g01680 Bda-Chr13:40175782 Bda03g00160 Bda-Chr3:1319585 2.70E-06 dispersed
Bda07g00737 Bda-Chr7:8698315 Bda03g00160 Bda-Chr3:1319585 2.20E-94 transposed
Bda07g01133 Bda-Chr7:13478377 Bda03g00160 Bda-Chr3:1319585 6.35E-109 transposed
Bda09g00309 Bda-Chr9:3852688 Bda03g00160 Bda-Chr3:1319585 3.55E-101 transposed
Bda09g00968 Bda-Chr9:38813225 Bda03g00160 Bda-Chr3:1319585 1.61E-93 transposed
Bda10g00018 Bda-Chr10:354206 Bda03g00160 Bda-Chr3:1319585 8.21E-152 transposed
Bda12g01055 Bda-Chr12:42319295 Bda03g00160 Bda-Chr3:1319585 4.87E-75 transposed
Bda01g00600 Bda-Chr1:33002327 Bda03g00160 Bda-Chr3:1319585 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15614 PF00847 AP2 6.10E-07 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00160 K09285 - jre:108983297 704.131