Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00161 ATGAGCTCTGATCAGGCAAAGTTGTTCGTTGGTGGAATTTCGAGGGAGACGAGTGAGGATGCCCTCAGAGAGCATTTTCAGAGCTACGGTACCGTTTTGGGTTCAGTGATTGCGAGAGATCGAAGTACGAGAAACCCTAGAGGTTTTGGCTTTGTCTGGTTTGCTGACCCAACTTCTACAGGAAAAGCTCTCGAGGATAAGCATGTCATTCTGGGACGAGCGGTAGAGGTTAAAAGAGCAGTACCTAGAAGTGACCAAGTACCATACCAACAACAGAATAGAGGATTAAGTAACAGTGGTAAGAACGAATCCTTCAATCATCAGTATAAAACGAAAAAGATTTTTGTGGGCGGCCTATCAGCTAATCTAACAGAGAAAGAGTTCAAAAGTTACTTTGAGAAGTTTGGTAGGATAACAGATGTAGTAGTGATGCATGACATTTCAACCCAACGTCCTAGGGGATTTGGGTTTATAACCTTTGACTTAGAGGAATCTGTTGAGACTGTTGTGCAGAATAACTTTCACGACTTGAATGGTAGGCTTGTGGAAGTCAAAAGAGCTGTGCCAAAAGAGGGGAATAATGCCACTGATGAGAATTGTAATGCGAGAATCGGAGGAGGGAGAGGGTCTGTGCATAATCACCTTAGGAGAAATCATCCTCCTCCGTCCCCTAGCCATGGAATTCTGCCTAGTTATCAACCACTTCCGGGTTATGCTGCATTTGGTAGTAATTTTTATGGATCAGGAGTCTATGGTGGTTGGTATCCCATGGGAGCATATTGTGGAGTTGGTTATGAGATGACTCCTCCCAGGGGCACTTGGTATGCTCCCTTTATCGGAACAAGGTCATGGCCATTACAGTTTGGTTGCAGTCCAATTTTTCCCACGTTCATAAATAGTGGAGTTAGTGTTTCAGGCAATGGAATTATTGAACCAAGAATCCCTTCGAAGCAAAATGAGGAATTTCATGGAACTGGGAATGCACGGCCTGACATGATGCCATCTAATGCTGGAGGGCAGAGCACATTCCATTAG 1035 44.35 MSSDQAKLFVGGISRETSEDALREHFQSYGTVLGSVIARDRSTRNPRGFGFVWFADPTSTGKALEDKHVILGRAVEVKRAVPRSDQVPYQQQNRGLSNSGKNESFNHQYKTKKIFVGGLSANLTEKEFKSYFEKFGRITDVVVMHDISTQRPRGFGFITFDLEESVETVVQNNFHDLNGRLVEVKRAVPKEGNNATDENCNARIGGGRGSVHNHLRRNHPPPSPSHGILPSYQPLPGYAAFGSNFYGSGVYGGWYPMGAYCGVGYEMTPPRGTWYAPFIGTRSWPLQFGCSPIFPTFINSGVSVSGNGIIEPRIPSKQNEEFHGTGNARPDMMPSNAGGQSTFH 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1325594 1326998 - Bda016103.1 Bda03g00161 3420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00161 344 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Bda03g00161 344 MobiDBLite consensus disorder prediction 82 104 - -
Bda03g00161 344 MobiDBLite consensus disorder prediction 85 104 - -
Bda03g00161 344 Gene3D - 1 110 IPR012677 -
Bda03g00161 344 PANTHER TRANSFORMER-2-RELATED 1 297 - -
Bda03g00161 344 MobiDBLite consensus disorder prediction 318 344 - -
Bda03g00161 344 SUPERFAMILY RNA-binding domain, RBD 110 210 IPR035979 GO:0003676
Bda03g00161 344 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bda03g00161 344 SMART rrm1_1 113 185 IPR000504 GO:0003723
Bda03g00161 344 Gene3D - 111 201 IPR012677 -
Bda03g00161 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Bda03g00161 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Bda03g00161 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Bda03g00161 344 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 297 - -
Bda03g00161 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00161 K14411 MSI; RNA-binding protein Musashi - cpap:110808269 372.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00161 Bda-Chr3:1325594 Bda03g01091 Bda-Chr3:10971785 8.70E-67 dispersed
Bda03g00161 Bda-Chr3:1325594 Bda14g00679 Bda-Chr14:5080148 1.91E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g611 Blo01g01487 Blo12g00997 . Bda03g00161 . Bpe04g00143 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1318 . . Lsi04g01457 Csa04g02503 . . . . . . . . . Bma05g00060 . . . . . . . . Cpe02g00237 . . . . . . . . . . . . . . . . Chy07g00210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010408 1 1 2 0 2 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 0 1 2 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00161 Bda_Chr03 FPKM 13.229003 14.206325 10.32527 10.404474 19.783957 19.027105 18.262596 7.292613 9.073038