Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00162 ATGGATTTAGGGATTATTGGTTTGGAGGGGTTGGTGGGTTCGGATTCCGGTTTCTCTCGTCTTTCTTCGTATTTCGAAACGAAGCGCAGATTGTACGGATCCGACGGGTTTTTGAAGGAGGAAAGATCTTGCTCTGTTGATGAAGAATGGTGGAATTCGAAAATGGCGAAGACCGTCGATTTATCTGCATTCAAGGAAATAGAGAGAAGCCCAAGGATGAGATCCGATTGCTGCGTCTCCGTCGACCAGAAACAAGAGCAAATGCTGATTTTTGCCTCTCCAAAATCAGACTCCTTGTTGGTGGAAAAGAGTTCTCAAAACGCTGCATTGCCTTACCCTCACCACAAGTCTTCTGCATTTAGTAGAAGCGAAGTCTATGGATGTGGAAGCTTCAATTATGGAGTCTCATCTAGTGCCTTGCCAGGACTGAGAGGGCCATTTACTCAGTCTCAATGGATGGAGCTGGAGCACCAGGCTTTGATTTACAAATACATGACTTCTAATATTCCTGTTCCATCTCATCTCCTCCTCCCCATCAGAAAGGCCCTTCATTCTGCTGCGCTGTCTTGTTTTTCAGGCGGATTTCTCAAACCAAGTTCGTTTGAATGGGGTTCTTTCCGAGTGGGATTCTCCAACAACGCCGATCCAGAACCGGGGAGATGCCGGCGGACCGATGGGAAGAAATGGCGGTGCTCCAGGGAGGCTGTCGCCGATCAGAAATACTGTGAGCGGCACGTGAACAGAGGCCGTCACCGTTCAAGAAAGCCTGTGGAAGGCCTATCAGGCCATTCCGTCGCCGGAAATTCTATTGCCACAAACGGCGCCACTAAGCCGATTCCTTTCCCGCCGACTTTAGCAGTGGTTGCTGGCGGCGGATCGTCCAATAGCCTCACTGTAACTGACCAATCGCTCAGGACTTGTCTATCTCCACCGTCTGTTCCCTCCCAAATAGACAGGTCATCGATACTGTCGAACAGAGGGAAGGTGAAAGCCGGTGAGAAAACAGGAGGCGGATTAGGCCTCTCCATGGAATCTCCCACCCCTGACCTAAAATCGGAAGCAATTCCATTCTTAATTGAGAAACAGCAAATTTCATTTGAAGAATCAGAAAGATCAGGTTTTGGAGTAGTCTCCTCTGAGTCTCTCCTCAATCCTTGTCTAAAAGACTCCCAACATTCCCTCTGTCAATTCACGAACCCTACTACAAACCAATGCAATCGAACCGCACTTTCATGGCCGGACCTCGAGTTCGAATCTGAAATCACGCAACTGACGATGTCCTCTGCATTTCCTGCAAGTGAGAAACTGGCCGCCCCTCCTGAACCGGATTCCACTCGAATGGATTTAGGAATCGGAAGGACTTGGGAAACTTCTATTGGCGGTCCTTTAGGAGAGGTTTTACATCAGACCAACAACAATGGAACTGCATATTGGGATCGAAGCCCTCCATATGGGTCATCTCCTACTGGTGTTTTACAGAAGGCTGTGTTTAGCTCACTTTCCAACAGCAGTGGAGGGAATAGTTCAAGAGCTGACAACGCCGAGACCTAG 1551 48.74 MDLGIIGLEGLVGSDSGFSRLSSYFETKRRLYGSDGFLKEERSCSVDEEWWNSKMAKTVDLSAFKEIERSPRMRSDCCVSVDQKQEQMLIFASPKSDSLLVEKSSQNAALPYPHHKSSAFSRSEVYGCGSFNYGVSSSALPGLRGPFTQSQWMELEHQALIYKYMTSNIPVPSHLLLPIRKALHSAALSCFSGGFLKPSSFEWGSFRVGFSNNADPEPGRCRRTDGKKWRCSREAVADQKYCERHVNRGRHRSRKPVEGLSGHSVAGNSIATNGATKPIPFPPTLAVVAGGGSSNSLTVTDQSLRTCLSPPSVPSQIDRSSILSNRGKVKAGEKTGGGLGLSMESPTPDLKSEAIPFLIEKQQISFEESERSGFGVVSSESLLNPCLKDSQHSLCQFTNPTTNQCNRTALSWPDLEFESEITQLTMSSAFPASEKLAAPPEPDSTRMDLGIGRTWETSIGGPLGEVLHQTNNNGTAYWDRSPPYGSSPTGVLQKAVFSSLSNSSGGNSSRADNAET 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1328343 1330486 + Bda016104.1 Bda03g00162 3421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00162 516 Pfam WRC 216 258 IPR014977 -
Bda03g00162 516 MobiDBLite consensus disorder prediction 497 516 - -
Bda03g00162 516 MobiDBLite consensus disorder prediction 305 348 - -
Bda03g00162 516 PANTHER - 451 512 IPR031137 GO:0005634|GO:0006351|GO:0032502
Bda03g00162 516 PANTHER - 23 437 IPR031137 GO:0005634|GO:0006351|GO:0032502
Bda03g00162 516 SMART QLQ_2 145 181 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bda03g00162 516 Pfam QLQ 146 180 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bda03g00162 516 ProSiteProfiles QLQ domain profile. 146 181 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bda03g00162 516 PANTHER GROWTH-REGULATING FACTOR 9 451 512 - -
Bda03g00162 516 PANTHER GROWTH-REGULATING FACTOR 9 23 437 - -
Bda03g00162 516 MobiDBLite consensus disorder prediction 305 323 - -
Bda03g00162 516 ProSiteProfiles WRC domain profile. 215 259 IPR014977 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00162 - - - vvi:100260890 497.664
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01584 Bda03g00162 CCT
Bda01g00599 Bda03g00162 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00162 Bda-Chr3:1328343 Bda14g01295 Bda-Chr14:14100569 1.58E-89 dispersed
Bda03g01681 Bda-Chr3:56198100 Bda03g00162 Bda-Chr3:1328343 4.34E-33 transposed
Bda01g01584 Bda-Chr1:51668301 Bda03g00162 Bda-Chr3:1328343 3.26E-137 wgd
Bda01g00599 Bda-Chr1:32991420 Bda03g00162 Bda-Chr3:1328343 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g612 Blo01g01488 Blo12g00996 Bda01g00599 Bda03g00162 Bpe02g00463 Bpe04g00144 . . Cmo05g00128 Cmo12g00548 . . . Car12g00553 . . Cpe07g00530 Bhi04g00454 Tan02g1695 . . Hepe08g1351 . . Cla08g01639 Cam08g2143 Cec08g1730 Cco08g1850 Clacu08g1831 . Cre08g1614 Cone4ag1631 Cone7ag1319 Cone17ag0901 Cone20ag0243 . . . Cme03g02123 . Blo18g00727 . Bda01g01584 Bpe02g01773 . Bma01g00682 . . . . Cma12g00612 Cma05g00124 Car05g00106 . Cpe11g00107 . . . . . . . . . . . . . . . Lsi08g01545 Csa02g01873 Chy03g01613 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001015 3 4 5 4 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 2 3 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15615 PF08879 WRC 8.20E-21 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00162 Bda_Chr03 FPKM 116.235641 122.389153 106.615784 95.861824 161.333832 162.427887 157.578705 121.272789 135.745377