Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00163 AGATACTATTACAACAAAAGGACCAAGCAATCAAGCTGGGAGAAGCCTTTAGAACTAATGACACCACTTGAGAGGGCAGATGCTTCAACTGTTTGGAAGGAATTTACTACTCCAGATGGAAGGAAGTACTATTACAACAAAGAGACAAAGGAATCTAAATGGGCAATGCCAGATGATTTAAAGATGGCTCGTGAACAGGCTCAACAAGAGGCTAGCCATGAGACACAATCAGATATGGCTGAGACTTCACATACTGCTTCCGCTGTTGAGGCTCCTGTAGATCAAATATCTACTGCTGCTATTTCTGTCAACTCCAAGGCTTCTACAACTCTGTCTGAGATGCCTCAAAGTTCAGTTGATGAAACGCCTATTGTTACTGTATCTAATCCTCCGGCAGTTGAATTGGGAACTGTTTCAAATGCACTGACAACTGCAACAAGTCAATCTGAGACAAAGAAGGGAACTGCAGTGATTGGGAAAGTCAATTTCTCAGAGGAAAAAGCTGTTGAGGATGAGCCGTTGGTCTTTGCAAATAAGTTGGAGGCAAAAAATGCATTCAAAATGCTTCTGGAATCTGCTAATGTTAAATCTGATTGGACTTGGGAGCAGACGATGAAAGAGATAATCAATGACAAAAGATATGGTGCATTGAAAACGCCTGGTGAAAGGAAGCAAGCTTTTAATGAGTACTTAGGTCAGAGAAGGAAATTGGATGCTGAAGAGAGACGCACGAGACAGAAAAGAGCCCGTGAAGAATTCACAAAGATGTTAGAAGAGTCTGAGGAGCTCACATCATCTATGAGATGGAGTAAAGCTATTTGCCTATTTGAAAACGATGAACGGTTTAATGCTGTTGAACGAGCAAGAGATAGAGAAGACCTTTACGAGAGCTACATGGTGGAACTTGAGCGGAAGGCAGCTGAAGAGCATAAGAAGAATATAGCTGAATACAGGAAATTTCTTGAGTCATGTGACTTTGTTAAGGTTAACAGCCAGTGGCGGAAAGTGCAAGATCGGTTAGAGGATGATGAAAAGAGCTCATGTCTTGAAAAGCTTGATCGGTTGCTTATTTTCCAGGACTATATCCGTGACCTGGAAAAGGAAGAGGATGACCACAAGAAGATACAGAAGGAGCAAATTAGAAGGGTTGAACGAAAAAATCGTGATGAGTTTCGCAGGCTCATCGAGGATCACATTACTTCTGGGTTTCTTACCGCTAAAACTCTCTGGCGCGAGTACTGTTTGAAGGTCAAGGACTTTCCTCAATATATGTCGCTTGCTTCTAATATGTCTGGTTCCACGCCGAGAGATTTGTTTGAAGATGTGGCTGAAGAATTAGAAAAGCAGTATCATGAGGAAAAGGCCCAAATCAAAGATATTATAAAATCAAGCAAGATTGCCATGACATCAGCGTGGACATTTGAAGAGTTCAAGGCTGCTGTCAGAGAAAATGCTGGTTCTCTTGCAGTATCAGATATTAATTTTGAGCTTGTATATGAAGAGTTTTTAGGAAGAGTCAAAGAGAAGGAAGAGAAAGAAGCTAAAAGGCGCCAGCGACTGGCTGATGACTTCACCAAGCTGCTGCATACGTTCAAGGAAATAACTGTATCTTCCATTTGGGAGGACTGCAAAGAACTTTTTGAAGAAAGCCAAGAGTACAGATCAATTGGGGAAGAAACCTTTGGAAGGGAGATTTTTTATGAATATATTATATTCCTACAAGAAAAGGCAAAAGAGAAAGAACGCAAGCGGGAGGAAGAGATGGCTAAGAAAGGAAAAGAAAGAGAGGAGAAAGAGAAAAGAAAGGAAAAAGAGCGGAAGGAGAAGGAGAGAGGAGATCGTGAAAAGGACAGGGGTCGATCTAAGAAGGAGGGAACTGATGATGAAGCTATGGATATGATAGATGATCATAAAGAAGATAAGAAAAGGGACAGAGACAAGGATAGGAAACACCGGAAGCGTCATCATAGTGCAACAGATGATGGAGATTCTGATAGAGATGAGAAAGAGGAACCTAAGAAATCACGCAAACATAGTAGTGACCGAAAAAAATCAAAGAAGGCATGTGAATTTATTTTATCATATCATGCATACACCCCCGAATCAGACAGTGAAGGTTGGGATAGAAGACATCGGAGACATCACCGAGAAACTTCTCGTAGGAATGGAGGATATGAGGAACTTGAGGATGGTGAGCTTGGTGAAGATGGGGAAATCCAGTAA 2223 41.48 RYYYNKRTKQSSWEKPLELMTPLERADASTVWKEFTTPDGRKYYYNKETKESKWAMPDDLKMAREQAQQEASHETQSDMAETSHTASAVEAPVDQISTAAISVNSKASTTLSEMPQSSVDETPIVTVSNPPAVELGTVSNALTTATSQSETKKGTAVIGKVNFSEEKAVEDEPLVFANKLEAKNAFKMLLESANVKSDWTWEQTMKEIINDKRYGALKTPGERKQAFNEYLGQRRKLDAEERRTRQKRAREEFTKMLEESEELTSSMRWSKAICLFENDERFNAVERARDREDLYESYMVELERKAAEEHKKNIAEYRKFLESCDFVKVNSQWRKVQDRLEDDEKSSCLEKLDRLLIFQDYIRDLEKEEDDHKKIQKEQIRRVERKNRDEFRRLIEDHITSGFLTAKTLWREYCLKVKDFPQYMSLASNMSGSTPRDLFEDVAEELEKQYHEEKAQIKDIIKSSKIAMTSAWTFEEFKAAVRENAGSLAVSDINFELVYEEFLGRVKEKEEKEAKRRQRLADDFTKLLHTFKEITVSSIWEDCKELFEESQEYRSIGEETFGREIFYEYIIFLQEKAKEKERKREEEMAKKGKEREEKEKRKEKERKEKERGDREKDRGRSKKEGTDDEAMDMIDDHKEDKKRDRDKDRKHRKRHHSATDDGDSDRDEKEEPKKSRKHSSDRKKSKKACEFILSYHAYTPESDSEGWDRRHRRHHRETSRRNGGYEELEDGELGEDGEIQ 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1334422 1343802 + Bda016105.1 Bda03g00163 3422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00163 740 Gene3D FF domain 179 234 IPR036517 -
Bda03g00163 740 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 1 734 - -
Bda03g00163 740 Gene3D FF domain 309 374 IPR036517 -
Bda03g00163 740 Gene3D FF domain 236 308 IPR036517 -
Bda03g00163 740 Gene3D FF domain 375 457 IPR036517 -
Bda03g00163 740 ProSiteProfiles FF domain profile. 310 364 IPR002713 -
Bda03g00163 740 SUPERFAMILY FF domain 240 306 IPR036517 -
Bda03g00163 740 Pfam FF domain 181 230 IPR002713 -
Bda03g00163 740 Pfam FF domain 248 298 IPR002713 -
Bda03g00163 740 Pfam FF domain 312 361 IPR002713 -
Bda03g00163 740 ProSiteProfiles FF domain profile. 179 233 IPR002713 -
Bda03g00163 740 SUPERFAMILY FF domain 377 452 IPR036517 -
Bda03g00163 740 MobiDBLite consensus disorder prediction 581 740 - -
Bda03g00163 740 MobiDBLite consensus disorder prediction 655 677 - -
Bda03g00163 740 Gene3D FF domain 511 585 IPR036517 -
Bda03g00163 740 Coils Coil 570 615 - -
Bda03g00163 740 MobiDBLite consensus disorder prediction 581 646 - -
Bda03g00163 740 ProSiteProfiles WW/rsp5/WWP domain profile. 26 59 IPR001202 GO:0005515
Bda03g00163 740 SMART ww_5 27 59 IPR001202 GO:0005515
Bda03g00163 740 ProSiteProfiles FF domain profile. 246 301 IPR002713 -
Bda03g00163 740 SUPERFAMILY WW domain 2 24 IPR036020 GO:0005515
Bda03g00163 740 CDD WW 1 18 IPR001202 GO:0005515
Bda03g00163 740 Pfam WW domain 32 56 IPR001202 GO:0005515
Bda03g00163 740 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 1 734 IPR039726 GO:0045292
Bda03g00163 740 SUPERFAMILY WW domain 31 65 IPR036020 GO:0005515
Bda03g00163 740 SUPERFAMILY FF domain 170 233 IPR036517 -
Bda03g00163 740 ProSiteProfiles WW/rsp5/WWP domain profile. 1 18 IPR001202 GO:0005515
Bda03g00163 740 SMART FF_2 179 233 IPR002713 -
Bda03g00163 740 SMART FF_2 517 572 IPR002713 -
Bda03g00163 740 SMART FF_2 246 301 IPR002713 -
Bda03g00163 740 SMART FF_2 310 364 IPR002713 -
Bda03g00163 740 Coils Coil 358 378 - -
Bda03g00163 740 MobiDBLite consensus disorder prediction 69 91 - -
Bda03g00163 740 SUPERFAMILY FF domain 518 579 IPR036517 -
Bda03g00163 740 CDD WW 32 59 IPR001202 GO:0005515
Bda03g00163 740 Coils Coil 436 463 - -
Bda03g00163 740 Coils Coil 285 305 - -
Bda03g00163 740 MobiDBLite consensus disorder prediction 61 91 - -
Bda03g00163 740 Gene3D - 1 27 - -
Bda03g00163 740 Gene3D - 28 73 - -
Bda03g00163 740 SUPERFAMILY FF domain 304 371 IPR036517 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00163 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101203479 868.226
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00163 Bda-Chr3:1334422 Bda10g00914 Bda-Chr10:43547395 2.33E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00163 Bda_Chr03 FPKM 123.90715 129.137375 114.840363 106.290764 120.97348 133.06842 125.62381 209.511322 223.440277