Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00173 ATGTCTGGCGTAGAACAGAATTACAAGAGAAGGTTTACGAGTTGGGAGTTGAAATTAAAAGCAAAGGGACATCTTTCTGCTATGGGATGGGTGTTTTACTGTGTTGAGAAGAAAGGAGAGTTTAAGCTGCGTTACCGATCACCAAGTGGTATGGTTTATCACTCTCTTAGAACAGCATGTAAGGGCTGTATAGATGAGGGCGGAGCCACTAAGGTTGATGATGGCTTAAACGACCTTTCTGTAAGTACTACTTCAACTTGCACCGATATTTTGATCGTTGATGTTGATGAGGATCCTCAGTTATCTAACGAGAACAGAAAATTGGCGAAAACTTTGAAGCCATCCCAATTTTCATCTACAGGGGGACAAAGGAAAAATGAGGAGGAAAGGACAATTGATGAGAGGCTTGCAACAGAGAACGACCATATTTGTTCTGTTTGCCAATATGGGGGTGAGCTAATTTTATGTGATGGATGCCCCTCTTCATTTCACGGCAACTGTCTCGGTTTGAAGGAGATTCCAGAGGGTGATTGGTTCTGCCCATCATGCTGCTGCGAAATTTGCCGGCAGGGGAAGTGGACACAGCTCTCTGAACATCAAACAGATGCGAATTGTTCCCGCTGTCATCAATGCGATCGTAAATATCATATAGGGTGTCTGAGGAGTAAAGGGGAAGTTGACATGGACAAGCTTTCTTCCAATGAAAAATGGTTTTGCAGCACTAAATGTGAAAGTATATTTCTAGCTCTCCATAAACTTTTGGGGAGACAAATTTCTACTGGTGACGATAATTTGACTTGGACTTTGTTGAAGTCTGTCCAAAATCCTGATACAGAGGCCATGGCGGAGACTTATAGCAAGCTTAACGTTGCTCTTAGTGTGATGCATGAATGTTTTGAGCCAGTTAAAGATTCTGTCACGAATAGATTTCTTGTTGAAGATGTCATATTCAGCAAGGAATCAGTGGTGAGGCGCTTGAACTTCAAAGGGTTCTACACGGTGATTTTGGAGAGAAATGACGACTTAATATCTGCAGCGACAGTGAGGGTCTATGGAAAAATGGTAGCAGAAGTTCCTCTTGTTGGCACTCGATTTCGATATCGTAGGCTTGGGATGTGTCGAATTCTGATGAATGAGCTTGAAAAACAGCTCTTGGAGATGGGTGTGGAGAGGCTGGTTCTACCTGCTGCCCCATCTGCCCTCAACACTTGGACTGGTTCCTTCGGATTCTCGCCTATGACGGATTCCGAGAGATGGGGGATTTTGAATTTCACTTTCTTGGACTTCCAGGAAACCATCATGTGCCATAAGCTATTATCGAGACCCCCTGCAGTAAATCCAATGAATGGTTCCACCGCCATTTGTGAAAAATCTGAAGCTTATCTTCCAATTAATGGCTGCAAAAATTCGGACCAAATGCTAAGCTGA 1428 43.42 MSGVEQNYKRRFTSWELKLKAKGHLSAMGWVFYCVEKKGEFKLRYRSPSGMVYHSLRTACKGCIDEGGATKVDDGLNDLSVSTTSTCTDILIVDVDEDPQLSNENRKLAKTLKPSQFSSTGGQRKNEEERTIDERLATENDHICSVCQYGGELILCDGCPSSFHGNCLGLKEIPEGDWFCPSCCCEICRQGKWTQLSEHQTDANCSRCHQCDRKYHIGCLRSKGEVDMDKLSSNEKWFCSTKCESIFLALHKLLGRQISTGDDNLTWTLLKSVQNPDTEAMAETYSKLNVALSVMHECFEPVKDSVTNRFLVEDVIFSKESVVRRLNFKGFYTVILERNDDLISAATVRVYGKMVAEVPLVGTRFRYRRLGMCRILMNELEKQLLEMGVERLVLPAAPSALNTWTGSFGFSPMTDSERWGILNFTFLDFQETIMCHKLLSRPPAVNPMNGSTAICEKSEAYLPINGCKNSDQMLS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1393461 1395395 - Bda016115.1 Bda03g00173 3432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00173 475 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 309 421 IPR016181 -
Bda03g00173 475 Pfam PHD-finger 143 185 IPR019787 -
Bda03g00173 475 ProSiteProfiles Zinc finger PHD-type profile. 141 186 IPR019787 -
Bda03g00173 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 245 IPR013083 -
Bda03g00173 475 CDD NAT_SF 334 394 - -
Bda03g00173 475 ProSitePatterns Zinc finger PHD-type signature. 144 183 IPR019786 -
Bda03g00173 475 SUPERFAMILY FYVE/PHD zinc finger 114 184 IPR011011 -
Bda03g00173 475 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 276 428 IPR000182 GO:0016407
Bda03g00173 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 185 IPR013083 -
Bda03g00173 475 Gene3D - 279 411 - -
Bda03g00173 475 SMART PHD_3 143 184 IPR001965 -
Bda03g00173 475 SMART PHD_3 185 244 IPR001965 -
Bda03g00173 475 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 128 442 - -
Bda03g00173 475 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 93 - -
Bda03g00173 475 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 128 442 - -
Bda03g00173 475 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 10 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00862 Bda-Chr2:49060245 Bda03g00173 Bda-Chr3:1393461 4.59E-127 dispersed
Bda03g00173 Bda-Chr3:1393461 Bda10g00577 Bda-Chr10:39749334 2.20E-67 dispersed
Bda07g00233 Bda-Chr7:2939096 Bda03g00173 Bda-Chr3:1393461 2.54E-06 transposed
Bda07g00305 Bda-Chr7:4139617 Bda03g00173 Bda-Chr3:1393461 9.48E-51 transposed
Bda01g00592 Bda-Chr1:32934254 Bda03g00173 Bda-Chr3:1393461 3.10E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15616 PF00628 PHD 5.10E-09 CL0390 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00173 - - pavi:110772469 426.017