Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00173 ATGTCTGGCGTAGAACAGAATTACAAGAGAAGGTTTACGAGTTGGGAGTTGAAATTAAAAGCAAAGGGACATCTTTCTGCTATGGGATGGGTGTTTTACTGTGTTGAGAAGAAAGGAGAGTTTAAGCTGCGTTACCGATCACCAAGTGGTATGGTTTATCACTCTCTTAGAACAGCATGTAAGGGCTGTATAGATGAGGGCGGAGCCACTAAGGTTGATGATGGCTTAAACGACCTTTCTGTAAGTACTACTTCAACTTGCACCGATATTTTGATCGTTGATGTTGATGAGGATCCTCAGTTATCTAACGAGAACAGAAAATTGGCGAAAACTTTGAAGCCATCCCAATTTTCATCTACAGGGGGACAAAGGAAAAATGAGGAGGAAAGGACAATTGATGAGAGGCTTGCAACAGAGAACGACCATATTTGTTCTGTTTGCCAATATGGGGGTGAGCTAATTTTATGTGATGGATGCCCCTCTTCATTTCACGGCAACTGTCTCGGTTTGAAGGAGATTCCAGAGGGTGATTGGTTCTGCCCATCATGCTGCTGCGAAATTTGCCGGCAGGGGAAGTGGACACAGCTCTCTGAACATCAAACAGATGCGAATTGTTCCCGCTGTCATCAATGCGATCGTAAATATCATATAGGGTGTCTGAGGAGTAAAGGGGAAGTTGACATGGACAAGCTTTCTTCCAATGAAAAATGGTTTTGCAGCACTAAATGTGAAAGTATATTTCTAGCTCTCCATAAACTTTTGGGGAGACAAATTTCTACTGGTGACGATAATTTGACTTGGACTTTGTTGAAGTCTGTCCAAAATCCTGATACAGAGGCCATGGCGGAGACTTATAGCAAGCTTAACGTTGCTCTTAGTGTGATGCATGAATGTTTTGAGCCAGTTAAAGATTCTGTCACGAATAGATTTCTTGTTGAAGATGTCATATTCAGCAAGGAATCAGTGGTGAGGCGCTTGAACTTCAAAGGGTTCTACACGGTGATTTTGGAGAGAAATGACGACTTAATATCTGCAGCGACAGTGAGGGTCTATGGAAAAATGGTAGCAGAAGTTCCTCTTGTTGGCACTCGATTTCGATATCGTAGGCTTGGGATGTGTCGAATTCTGATGAATGAGCTTGAAAAACAGCTCTTGGAGATGGGTGTGGAGAGGCTGGTTCTACCTGCTGCCCCATCTGCCCTCAACACTTGGACTGGTTCCTTCGGATTCTCGCCTATGACGGATTCCGAGAGATGGGGGATTTTGAATTTCACTTTCTTGGACTTCCAGGAAACCATCATGTGCCATAAGCTATTATCGAGACCCCCTGCAGTAAATCCAATGAATGGTTCCACCGCCATTTGTGAAAAATCTGAAGCTTATCTTCCAATTAATGGCTGCAAAAATTCGGACCAAATGCTAAGCTGA 1428 43.42 MSGVEQNYKRRFTSWELKLKAKGHLSAMGWVFYCVEKKGEFKLRYRSPSGMVYHSLRTACKGCIDEGGATKVDDGLNDLSVSTTSTCTDILIVDVDEDPQLSNENRKLAKTLKPSQFSSTGGQRKNEEERTIDERLATENDHICSVCQYGGELILCDGCPSSFHGNCLGLKEIPEGDWFCPSCCCEICRQGKWTQLSEHQTDANCSRCHQCDRKYHIGCLRSKGEVDMDKLSSNEKWFCSTKCESIFLALHKLLGRQISTGDDNLTWTLLKSVQNPDTEAMAETYSKLNVALSVMHECFEPVKDSVTNRFLVEDVIFSKESVVRRLNFKGFYTVILERNDDLISAATVRVYGKMVAEVPLVGTRFRYRRLGMCRILMNELEKQLLEMGVERLVLPAAPSALNTWTGSFGFSPMTDSERWGILNFTFLDFQETIMCHKLLSRPPAVNPMNGSTAICEKSEAYLPINGCKNSDQMLS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1393461 1395395 - Bda016115.1 Bda03g00173 3432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00173 475 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 309 421 IPR016181 -
Bda03g00173 475 Pfam PHD-finger 143 185 IPR019787 -
Bda03g00173 475 ProSiteProfiles Zinc finger PHD-type profile. 141 186 IPR019787 -
Bda03g00173 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 245 IPR013083 -
Bda03g00173 475 CDD NAT_SF 334 394 - -
Bda03g00173 475 ProSitePatterns Zinc finger PHD-type signature. 144 183 IPR019786 -
Bda03g00173 475 SUPERFAMILY FYVE/PHD zinc finger 114 184 IPR011011 -
Bda03g00173 475 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 276 428 IPR000182 GO:0016407
Bda03g00173 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 185 IPR013083 -
Bda03g00173 475 Gene3D - 279 411 - -
Bda03g00173 475 SMART PHD_3 143 184 IPR001965 -
Bda03g00173 475 SMART PHD_3 185 244 IPR001965 -
Bda03g00173 475 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 128 442 - -
Bda03g00173 475 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 93 - -
Bda03g00173 475 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 128 442 - -
Bda03g00173 475 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 10 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00173 - - - pavi:110772469 426.017
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00862 Bda-Chr2:49060245 Bda03g00173 Bda-Chr3:1393461 4.59E-127 dispersed
Bda03g00173 Bda-Chr3:1393461 Bda10g00577 Bda-Chr10:39749334 2.20E-67 dispersed
Bda07g00233 Bda-Chr7:2939096 Bda03g00173 Bda-Chr3:1393461 2.54E-06 transposed
Bda07g00305 Bda-Chr7:4139617 Bda03g00173 Bda-Chr3:1393461 9.48E-51 transposed
Bda01g00592 Bda-Chr1:32934254 Bda03g00173 Bda-Chr3:1393461 3.10E-37 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00235 . 8 379 PHD Transcription Factor Family AT1G05380 54.8 1.5e-114 411.4
Bda03g01749 BCT 22 844 PHD Transcription Factor Family AT3G53680 53.6 2.2e-245 845.5
Bda14g00310 . 437 566 PHD Transcription Factor Family AT3G53680 53.8 4.0e-37 153.7
Bda15g00213 . 292 421 PHD Transcription Factor Family AT3G53680 53.1 3.4e-36 150.6
Bda08g00235 . 57 379 PHD Transcription Factor Family AT4G14920 59.6 4.0e-112 403.3
Bda03g00173 . 139 382 PHD Transcription Factor Family AT5G58610 54.0 4.2e-75 280.0
Bda10g01164 . 10 625 PHD Transcription Factor Family AT5G22260 50.1 3.7e-174 608.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006498 2 1 1 0 2 1 2 1 1 1 1 1 1 2 1 2 1 2 2 1 1 0 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15616 PF00628 PHD 5.10E-09 CL0390 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00173 Bda_Chr03 FPKM 25.699883 29.140572 31.084728 35.611496 37.748466 37.213634 40.929199 58.085136 56.070175