Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00179 ATGTCAGACGAGGAGCATAACTTCGAGTCCAAGGCCGATGCTGGAGCCTCGAAGACCTATCCTCAGCAGGCTGGAACTATCCGCAAGAACGGTTACATCGTCATCAAAGGCCGTCCCTGCAAGGTTGTTGAGGTTTCTACTTCCAAGACAGGGAAGCACGGACATGCAAAATGCCACTTTGTGGCTATTGATATTTTTACTGCCAAGAAACTTGAGGATATCGTCCCATCATCCCACAACTGTGATGTTCCTCATGTTACTCGCACTGATTATCAGCTGATTGACATATCTGAAGATGGATTTTTGAGTCTTTTGACTGATTCAGGTAGCACAAAAGATGACTTGAGACTTCCTACTGATGATAACCTGCTCACTCAGGCAAGGGACATGAACTCTTATCTACTGCATTTGAACATCATCCACAATTTTTGCTCAATGTCAATTAAAGAAGGATTTGCTGAGGGGAAGGACCTTGTGCTGACAGTCATGTCATCAATGGGAGAAGAGCAAATATGTGCCCTCAAGGACATTGGTCCCAAGAACTAA 546 44.69 MSDEEHNFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFLSLLTDSGSTKDDLRLPTDDNLLTQARDMNSYLLHLNIIHNFCSMSIKEGFAEGKDLVLTVMSSMGEEQICALKDIGPKN 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1435718 1437537 - Bda016122.1 Bda03g00179 3438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00179 181 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 129 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda03g00179 181 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 147 175 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda03g00179 181 SUPERFAMILY Nucleic acid-binding proteins 86 177 IPR012340 -
Bda03g00179 181 PIRSF Transl_init_eIF5A 135 178 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda03g00179 181 PIRSF Transl_init_eIF5A 1 140 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda03g00179 181 Gene3D - 86 180 IPR012340 -
Bda03g00179 181 Gene3D - 1 85 IPR014722 -
Bda03g00179 181 PANTHER BNAA07G09420D PROTEIN 148 177 - -
Bda03g00179 181 SMART eIF_5a_2 85 175 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda03g00179 181 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 148 177 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda03g00179 181 MobiDBLite consensus disorder prediction 1 21 - -
Bda03g00179 181 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bda03g00179 181 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Bda03g00179 181 CDD S1_eIF5A 86 177 - -
Bda03g00179 181 TIGRFAM eIF_5A: translation elongation factor IF5A 17 128 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bda03g00179 181 PANTHER BNAA07G09420D PROTEIN 1 123 - -
Bda03g00179 181 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 123 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00663 Bda-Chr1:33635457 Bda03g00179 Bda-Chr3:1435718 8.59E-113 dispersed
Bda03g00179 Bda-Chr3:1435718 Bda07g01480 Bda-Chr7:27504947 7.19E-108 dispersed
Bda03g00098 Bda-Chr3:920357 Bda03g00179 Bda-Chr3:1435718 4.75E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00179 K03263 - csv:101214693 297.36