Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00179 | ATGTCAGACGAGGAGCATAACTTCGAGTCCAAGGCCGATGCTGGAGCCTCGAAGACCTATCCTCAGCAGGCTGGAACTATCCGCAAGAACGGTTACATCGTCATCAAAGGCCGTCCCTGCAAGGTTGTTGAGGTTTCTACTTCCAAGACAGGGAAGCACGGACATGCAAAATGCCACTTTGTGGCTATTGATATTTTTACTGCCAAGAAACTTGAGGATATCGTCCCATCATCCCACAACTGTGATGTTCCTCATGTTACTCGCACTGATTATCAGCTGATTGACATATCTGAAGATGGATTTTTGAGTCTTTTGACTGATTCAGGTAGCACAAAAGATGACTTGAGACTTCCTACTGATGATAACCTGCTCACTCAGGCAAGGGACATGAACTCTTATCTACTGCATTTGAACATCATCCACAATTTTTGCTCAATGTCAATTAAAGAAGGATTTGCTGAGGGGAAGGACCTTGTGCTGACAGTCATGTCATCAATGGGAGAAGAGCAAATATGTGCCCTCAAGGACATTGGTCCCAAGAACTAA | 546 | 44.69 | MSDEEHNFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFLSLLTDSGSTKDDLRLPTDDNLLTQARDMNSYLLHLNIIHNFCSMSIKEGFAEGKDLVLTVMSSMGEEQICALKDIGPKN | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1435718 | 1437537 | - | Bda016122.1 | Bda03g00179 | 3438 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00179 | 181 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 129 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Bda03g00179 | 181 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 147 | 175 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Bda03g00179 | 181 | SUPERFAMILY | Nucleic acid-binding proteins | 86 | 177 | IPR012340 | - | |
Bda03g00179 | 181 | PIRSF | Transl_init_eIF5A | 135 | 178 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Bda03g00179 | 181 | PIRSF | Transl_init_eIF5A | 1 | 140 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Bda03g00179 | 181 | Gene3D | - | 86 | 180 | IPR012340 | - | |
Bda03g00179 | 181 | Gene3D | - | 1 | 85 | IPR014722 | - | |
Bda03g00179 | 181 | PANTHER | BNAA07G09420D PROTEIN | 148 | 177 | - | - | |
Bda03g00179 | 181 | SMART | eIF_5a_2 | 85 | 175 | IPR020189 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Bda03g00179 | 181 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 148 | 177 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Bda03g00179 | 181 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Bda03g00179 | 181 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | IPR019769 | GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905 | |
Bda03g00179 | 181 | SUPERFAMILY | Translation proteins SH3-like domain | 15 | 93 | IPR008991 | - | |
Bda03g00179 | 181 | CDD | S1_eIF5A | 86 | 177 | - | - | |
Bda03g00179 | 181 | TIGRFAM | eIF_5A: translation elongation factor IF5A | 17 | 128 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 | |
Bda03g00179 | 181 | PANTHER | BNAA07G09420D PROTEIN | 1 | 123 | - | - | |
Bda03g00179 | 181 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 123 | IPR001884 | GO:0003723|GO:0003746|GO:0043022|GO:0045901 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00663 | Bda-Chr1:33635457 | Bda03g00179 | Bda-Chr3:1435718 | 8.59E-113 | dispersed | |
Bda03g00179 | Bda-Chr3:1435718 | Bda07g01480 | Bda-Chr7:27504947 | 7.19E-108 | dispersed | |
Bda03g00098 | Bda-Chr3:920357 | Bda03g00179 | Bda-Chr3:1435718 | 4.75E-135 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00179 | K03263 | - | csv:101214693 | 297.36 |