Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00183 ATGGAGGATCATTTGGGCCTTCTTTGTGAAGAAGGTGGAGATTTTCTTTACAGAGAGGTTGCCGATGATGCTAGTACATTCGGCCGCTTCGAGAGAGATTCTGCGTTTGACGATGAGTTCGTCGGGATACTATTTGAGAGAGAAATTAATTTTGGGTTCAGGAACGATGAATCTTTCGCGTTTGACGACTGGATTAAATGTGCTCGTCTGGAAGCCATCAACTGGGTTCTTAAAACTAGAGGTGTGTTCGGATTCAAATTTCAAACAGCTTATTTGTCCCTGACATACTTCGATCGTCTCCTTTCGATAATACCCATCCCTAATGAGAAATTATGGGTAATTAGAGTGCTATCGATAGCCTGCCTTTCCTTGGCTGCTAAAATGGAGGAATTCGAGGTCCCTGGACTGTCCCAAATTCAACTTCAAGATTACAATTTTGAGAGCAAAGCAATAAAGAGAATGGAGTTTTTGGTATTATACACATTGGAATGGAAGATGAGCCCAATAACTCCATTTACTTTTATTCATTACTTCGTTTCGAAACTCTGCCAAGAATCCACAGCAAGAGATTTACATTCGGAGGCAGTTCGACTCATATTTGCTGCAATAGAAGAAATCAATTCGATGAATTATCGACCATCCGTTCTGGCTGTTGCTGCAACAATGGTGGAAATGGATCAGAGTCTAACAAGAGAATCGTTGGAGTTGAAAATTAACTCCATTTTGCACTGCGAATTCCTTGATATAGAAAGTGTGTTTTCAGCCTATAAAATGATACAGAAAGTGAAGGTGGAGAGACTGGAGAAAGATCCAGGGGCTTCTAGTTCGCCCGATTTATTCTCGAACCATGATAGAAAATTTTCACTTTCACTCGCTACTGCTCGTTGCGCCAAGAGAAGACTAGAATTCACGAACATCGATCGTGATCACGACAACGAAGATCAGCAGGGACATTGTTAG 960 41.35 MEDHLGLLCEEGGDFLYREVADDASTFGRFERDSAFDDEFVGILFEREINFGFRNDESFAFDDWIKCARLEAINWVLKTRGVFGFKFQTAYLSLTYFDRLLSIIPIPNEKLWVIRVLSIACLSLAAKMEEFEVPGLSQIQLQDYNFESKAIKRMEFLVLYTLEWKMSPITPFTFIHYFVSKLCQESTARDLHSEAVRLIFAAIEEINSMNYRPSVLAVAATMVEMDQSLTRESLELKINSILHCEFLDIESVFSAYKMIQKVKVERLEKDPGASSSPDLFSNHDRKFSLSLATARCAKRRLEFTNIDRDHDNEDQQGHC 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1497346 1498692 - Bda016128.1 Bda03g00183 3442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00183 319 Gene3D - 68 167 - -
Bda03g00183 319 PANTHER CYCLINS 36 280 IPR039361 -
Bda03g00183 319 SUPERFAMILY Cyclin-like 35 166 IPR036915 -
Bda03g00183 319 Pfam Cyclin, N-terminal domain 68 167 IPR006671 -
Bda03g00183 319 Gene3D - 168 246 - -
Bda03g00183 319 CDD CYCLIN 69 159 IPR013763 -
Bda03g00183 319 SUPERFAMILY Cyclin-like 152 244 IPR036915 -
Bda03g00183 319 Pfam Cyclin, C-terminal domain 169 263 IPR004367 -
Bda03g00183 319 ProSitePatterns Cyclins signature. 69 100 IPR006671 -
Bda03g00183 319 SMART cyclin_7 74 160 IPR013763 -
Bda03g00183 319 PANTHER CYCLIN-D5-1 36 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00183 K18811 CYCD5; cyclin D5, plant - zju:107433660 304.293
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00589 Bda03g00183 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00183 Bda-Chr3:1497346 Bda01g02234 Bda-Chr1:58166437 1.74E-39 dispersed
Bda04g00014 Bda-Chr4:157909 Bda03g00183 Bda-Chr3:1497346 4.80E-71 transposed
Bda01g00589 Bda-Chr1:32887839 Bda03g00183 Bda-Chr3:1497346 2.53E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g655 Blo01g01496 Blo12g00986 Bda01g00589 Bda03g00183 Bpe02g00451 . . Bma01g02248 . . Cma01g01787 Cma09g00289 Car01g01395 . . Cpe06g00199 . . . . . . . . . . . . . . . . Cone7ag1340 . . Lsi04g01489 Csa04g02476 . . . . . . . . . . . Cmo01g01845 Cmo09g00280 . . . Car09g00243 . Cpe02g00219 Bhi09g03230 . . . . . . Cla05g02105 Cam05g2257 Cec05g2278 Cco05g2318 Clacu05g2254 Cmu05g2116 Cre05g2240 . . Chy07g00188 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005430 2 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 2 40