Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00193 ATGTACAGGCCGGCGTTGATGCTTTCGAGCCCTTCTCAGCGATGGCATGAGGCTTTGGCACGCCTGATGTTCCCCCTAACTCTTTGGATTTGTGTTTCTGTGAGTATCCGATATGGATTCTACGGCGATTCTCGCATGGTTCTTGGACCGAGCTCGTCGAGGCTGATGAAGGCAAGCTCTATTTTCGTAGAACAAGTGGAAATTAGAGACGATAACTGCAAAGGGATGCAGCTTTATTCATTCTCCGAGAAGCCGGAATTGACTTTGGAAACGAATTGGAGCGTTTCGAATTACTTGATCGTTGCATCCTACGGCCGAAAGGGTTTTTCCCTGTGGCTAAACAGGGGTTCGAAGATAAGTATGAGATGGGAAACTCATAAGGGCAATTTGAACCAGCTTCAAGTTCTTATGATCAAAGGAGATCGAAAACACGAAACGTTATTACCAACATTCACTGGTTCTCCTTCCGCTGAACCACTCGAAGGCAGGGAGGCAGAATTCATGATCGAGGAGGATGATAAATACTTTTTAGGGTTCGTCAACAGCAACGGGAAAAGCATAATCATGACACTAAACCTAAATGTTTCATCAAAGAGTTACGACATTTCTCGTGCCAATAGTATCTGCTCCGCGACGAATGGCTCTTGCAAGCTCAACCTGCGATTTCCTTCAACTCAGTACGTCGTACTAACAACTCCCGACGACGGGGGTATTGGAGGATGGTATGTCGAGCTTTCTTTTGTAGCTCGAGTTGTGACTTACATCGCAATTCTTGGATTAATCATGATTGTCGTGTTTTTAATATTGAAGTATCTCGGAACATGCGATACCCGTAGTAGTACTGCTTTCATAGAAACAACTCCGCCCGAAATAAGAGTATCAGAGACAACACCTATATTGCCGGAGAAGCCGACCTGTCATACATACGGGACGGGTGATGACGACGAAGAATCTGGTGCGTCGAGTAGTTCATCGGAGGAGTTATATGATGACAAACTGTGCGTGATTTGCTACGACGAGCAGCGAAATTGCTTCTTCGTTCCCTGCGGTCACTGTGCAACCTGTTACGATTGTGCGCAAAGGATCATGGAGGGGGAGAGCAAGGTTTGCCCGATATGCAGAAGACTAATTCACAGAGTTAGAAAATTGTTCAACTCGTAG 1161 45.82 MYRPALMLSSPSQRWHEALARLMFPLTLWICVSVSIRYGFYGDSRMVLGPSSSRLMKASSIFVEQVEIRDDNCKGMQLYSFSEKPELTLETNWSVSNYLIVASYGRKGFSLWLNRGSKISMRWETHKGNLNQLQVLMIKGDRKHETLLPTFTGSPSAEPLEGREAEFMIEEDDKYFLGFVNSNGKSIIMTLNLNVSSKSYDISRANSICSATNGSCKLNLRFPSTQYVVLTTPDDGGIGGWYVELSFVARVVTYIAILGLIMIVVFLILKYLGTCDTRSSTAFIETTPPEIRVSETTPILPEKPTCHTYGTGDDDEESGASSSSSEELYDDKLCVICYDEQRNCFFVPCGHCATCYDCAQRIMEGESKVCPICRRLIHRVRKLFNS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1555050 1557015 - Bda016138.1 Bda03g00193 3452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00193 386 Pfam Domain of unknown function (DUF4792) 76 142 IPR032008 -
Bda03g00193 386 Pfam Domain of unknown function (DUF4793) 166 267 IPR032010 -
Bda03g00193 386 ProSiteProfiles Zinc finger RING-type profile. 334 374 IPR001841 -
Bda03g00193 386 SMART ring_2 334 373 IPR001841 -
Bda03g00193 386 MobiDBLite consensus disorder prediction 300 324 - -
Bda03g00193 386 PANTHER OS05G0521000 PROTEIN 9 385 IPR044586 GO:0004842
Bda03g00193 386 Pfam Zinc finger, C3HC4 type (RING finger) 331 380 - -
Bda03g00193 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 385 IPR013083 -
Bda03g00193 386 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 385 - -
Bda03g00193 386 SUPERFAMILY RING/U-box 325 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00193 - - - rcu:8288527 523.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00193 Bda-Chr3:1555050 Bda03g00818 Bda-Chr3:6947915 1.71E-47 dispersed
Bda11g01452 Bda-Chr11:20163283 Bda03g00193 Bda-Chr3:1555050 4.67E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g688 . Blo12g00977 . Bda03g00193 . . Bma04g00146 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1603 Cone7ag1347 . Cone20ag0218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015386 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2 12