Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00194 TTCCGCATGTCTGAAATCTGTGTTCGTCTCATTCGCGCTGCAAAGAAGAGAGAGGCCGCGGCTGGAATGGCGGAAGAACCATTGATTAAGAAGGAACGGGTCGTCTTAGGAGAGCTTCCTATTTTGCAGAATGCTAGTTTGCTTGTAGGTTTAAGGTCTGTCGAAAACTCAGATAAGCAGAAATGTATGGCGAGGAGGAAGGCGAACACGAAATGTTCGAGGATAGCTACAGAAAACAAAGCTAAAATAGCGAAGGATAGCAGTTTGAAATTGGGAATTGATCCGGATTCGGACGACCCTCAAATGTGCCGTTCTTATGCTACAGATATTTATGATTATCTTCACAAAATGGAGATGGAACCGAAAAGAAGGCCACTCCACAATTATCTTGAGAAAATTCAGAAGGATGTGACTGCTAATATGCGAGGAGTGTTGGTCGATTGGTTGGTAGAGGTCGCCGAGGAGTACAAACTCTGTTCAGATACTCTTTACCTCTCCATCTCTTATATCGATAGGTTTTTGTCTTTGCACACTCTTAATCGACAAAGGCTTCAACTTCTCGGCGTTTCTGCCGTGCTCATTGCTTCTAAGTACGAAGAGATTAGCCCTCCACATGTAGAAGAGTTGTGCTATATCACGGACAATACTTACACAAAAAACGAAGTGGTGAAGATGGAGGCTGATTTACTCAAATCTTTGAATTTCGAAACTGGCAATCCTACAACTAAGACATTCTTGAGACGGTTTATTAGTATTTCCCAAGAGCGAAATAGTGATCCCAACTCGCAGCTAGAGTTTCTGAGTTACTATCTTGCAGAATTAAGTTTACTGGACTACAATTTCTTAAAGTTCTTGCCCTCTTTGGTTGCTGCTGCTGTTGTTTTCATTGCAAAGTTCATACTTGAACCAAAGAATCACCCATGGCCACAATTGTTGGAACAATATTCTGGGTATAAATCGAACGAGTTGAAAGACTGTGTTCTTATGCTGCTTGACCTGTATCTGTGCAGAAGAGGAGGGTCTCTCTTAGCCATCAGAGAGAAATACAAGCAGCAGAAGTTCAAATGTGTGTCATCTCTCCCTTCGCCTCCGGAGATACCCGCTTTATATTTTGAGGATGTACGAGGGTTGTTGTCGATGCGATAA 1146 42.58 FRMSEICVRLIRAAKKREAAAGMAEEPLIKKERVVLGELPILQNASLLVGLRSVENSDKQKCMARRKANTKCSRIATENKAKIAKDSSLKLGIDPDSDDPQMCRSYATDIYDYLHKMEMEPKRRPLHNYLEKIQKDVTANMRGVLVDWLVEVAEEYKLCSDTLYLSISYIDRFLSLHTLNRQRLQLLGVSAVLIASKYEEISPPHVEELCYITDNTYTKNEVVKMEADLLKSLNFETGNPTTKTFLRRFISISQERNSDPNSQLEFLSYYLAELSLLDYNFLKFLPSLVAAAVVFIAKFILEPKNHPWPQLLEQYSGYKSNELKDCVLMLLDLYLCRRGGSLLAIREKYKQQKFKCVSSLPSPPEIPALYFEDVRGLLSMR 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1558109 1560119 + Bda016139.1 Bda03g00194 3453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00194 381 PIRSF Cyclin_A_B_D_E 13 369 IPR039361 -
Bda03g00194 381 Pfam Cyclin, C-terminal domain 240 362 IPR004367 -
Bda03g00194 381 ProSitePatterns Cyclins signature. 142 173 IPR006671 -
Bda03g00194 381 PANTHER CYCLINS 24 374 IPR039361 -
Bda03g00194 381 Pfam Cyclin, N-terminal domain 109 236 IPR006671 -
Bda03g00194 381 SMART Cyclin_C_2 240 363 IPR004367 -
Bda03g00194 381 CDD CYCLIN 141 230 IPR013763 -
Bda03g00194 381 SUPERFAMILY Cyclin-like 98 236 IPR036915 -
Bda03g00194 381 CDD CYCLIN 240 331 IPR013763 -
Bda03g00194 381 Gene3D - 109 359 - -
Bda03g00194 381 SUPERFAMILY Cyclin-like 240 365 IPR036915 -
Bda03g00194 381 Gene3D - 123 238 - -
Bda03g00194 381 PANTHER CYCLIN-A3-1-RELATED 24 374 - -
Bda03g00194 381 SMART cyclin_7 244 332 IPR013763 -
Bda03g00194 381 SMART cyclin_7 147 231 IPR013763 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01560 Bda03g00194 CCT
Bda01g01560 Bda03g00194 ECH
Bda01g00581 Bda03g00194 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01454 Bda-Chr1:50454887 Bda03g00194 Bda-Chr3:1558109 9.47E-90 dispersed
Bda03g00056 Bda-Chr3:687131 Bda03g00194 Bda-Chr3:1558109 3.82E-85 dispersed
Bda03g00194 Bda-Chr3:1558109 Bda08g01363 Bda-Chr8:54121845 6.99E-119 dispersed
Bda01g00581 Bda-Chr1:32830373 Bda03g00194 Bda-Chr3:1558109 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00194 K06627 - zju:107433703 471.47