Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00196 ATGGGTGCTAATTTTGTTCTCCTATTTCTTTTGATGGGATGGAGCCTCTGCATTCCAATGGCGGCTTCTGTATCTGGTTTGAATCAGCTCTCCGCTCTCTCTGTGGAGAAGCAAGATGACATTCTGGTTTCACCGAGCGGAGTTTTCACGGCTGGCTTCTTCTCCGTTGGTGAAAATGCATTTTGCTTCTCCATTTGGTTCAGTGAACCAGAAAACATTCAAAGTCGAGCCATTGTTTGGATGGCCAACCGTGATCAACCGGTCAATGGGAAGCACTCAAAGCTTTCGATCCTCAAAACTGGGAATGTTATCCTCACCGATGCTGATAAATTTGTTGTTTGGGAGACAAACACGGCCTCAGTGTCATCCGTACAGTTATATCTCCATGACTCCGGCAATCTGGTTCTTGCTTCGGAGGGAGATAATCTCTGGCAAAGCTTTGATTCGCCAACAGACACCCTTTTACCCCTTCAACTTCTAACTAAATACACGCAGCTTGTTTCCTCAAGAAGCAAAAGCAATTATTCATCTGGACTGTACAAGTTCTTCTTCGACAACGATAACACCCTCCGCCTCATCTTCGACACCCCTGCCATTTCCAGCGTGTATTGGTACGACCCTTGGCTTATAAGTTGGGAGGCCGCCAGATCTACTTATAACAACAGTAGAAATGCAATGCTTAATTCGTTGGGCAATTTCAGCTCCTCTGATGACTTCACGTTCAGGACTGCCGATTATGGAGCGAAGAATCAGAGAAGGTTGAGGATGGATCTTGATGGAAATATTCGAGTCTACAGCCGGGAAAAGGCCGGGCAGGATTGGGTCGTGTCTTGGCAAGCCATTCAAGAACCCTGTAAAATCCATGGCATTTGTGGGGCCAATAGTATCTGCACATACGTTCCCAGTTATGGCAGAAAATGCTCTTGCATTGTCGAACATAAGATGAAAGATGTTACAGACTGGTCTTTGGGGTGCGAGCCGCAATTCAATCTGTCGTGCAAGAACGACGACGGATTTGTCGTAGTCTCGCGGGCTGAATTCTATGGCTATGATTACGGATTCTTCCCCAATTACACTTCGCAGCAGTGTATGGATCTGTGTCTTCGTCTCTGTGAATGTATAGGTTTCCAGTTGCGTTATGATAATAGCGTGTTTAATTGTTACCCAAAAACAATTTTGCTAAATGGGTATCAGTCTCCTTCTTACGTTGGAGACTTTTACCTGAGGCTGCCAAAATCTAAATTATTCTCCTACAAGCCGCCGGTAGATGAGTTTCAGTCTCAATGCCCCGAAATTATGGAGCTCCAGCGAACATACATCAAAAACCAGGAAAACGAGAAGGTGAAAACAATCTTATGGTTCGCCTCCGGGCTAGGAGGGATTGAACTGATCTGTGTAATCTTCGTCTGGTGTTTTTTGATTAGAACCCAAAAGAACTCAAACCCAGAAACGCAAGGCTACGTTTTCGCGGCAACGGGATTCAAACGGTTTAGCTACGCCGAGCTGAAGAAGGCAACGGGGAATTTCAGCGAGGAAATAGGAAGAGGCGCAGGAGGCGTTGTGTACAAAGCTACACTCCCTGATCTTCGAGTGGCGGCGGTGAAGAGGCTGGCGGAGGCTACGCGAGGAGAAGCAGAGTTTCTCGCGGAAGCAAGCACCATCGGTAGACTTAACCATATGTACTTGATAGAAATGTGGGGCTACTGCGCCGAGGGAAAACACAGGCTTCTCGTCTACGAATTTATGGAGCATGGGTCATTGGCCAAGAACCTTTCTTCCAAAACGCTTGATTTTAGGAAGAGATTTGAAATTGCTGTGGGAACAGCAAAAGGGTTGGCTTATTTACACGAAGAGTGCCTAGAATGGGTTCTCCACTGCGACGTCAAGCCAGAAAATATTCTTCTGGATTCAAATTATTCCCCAAAAGTTGCAGACTTCGGGCTGTCTAAGCTCTTAGACAGAGGGCAGCTTCCAGACTCAGGTTTCTCGCGGGCGAGAGGAACGAGAGGTTATATGGCTCCTGAATGGGTTTATAATCTGCCAATCACGTCTAAAGTGGACGTTTATAGTTATGGGATTGTTGTGTGGGAGTTGGTGACCGGAAATAACCCAATGGAGTGTGTCCAGGCTGGCGAAAGTGTCGGGGAGAGAGAGCACAGAAGGATGGTGACGTGGATGAGAGGAAAAACCAACGACGGGGATGACGTGGCTTCGGGGATGTTAGAGATCGTTGACCCTTCACTGTGTGGAGATTATGATGGGGGAAAGATGGAAACTTTGGTTAAAGTTGCTCTTAAATGTTTGAGGGAAGATAGAGATGAGAGACCTAGTATGGGTCAAGTAGTGGAAATGCTTCTCAGCCATGAAAATGAGAATGTTTAG 2382 46.52 MGANFVLLFLLMGWSLCIPMAASVSGLNQLSALSVEKQDDILVSPSGVFTAGFFSVGENAFCFSIWFSEPENIQSRAIVWMANRDQPVNGKHSKLSILKTGNVILTDADKFVVWETNTASVSSVQLYLHDSGNLVLASEGDNLWQSFDSPTDTLLPLQLLTKYTQLVSSRSKSNYSSGLYKFFFDNDNTLRLIFDTPAISSVYWYDPWLISWEAARSTYNNSRNAMLNSLGNFSSSDDFTFRTADYGAKNQRRLRMDLDGNIRVYSREKAGQDWVVSWQAIQEPCKIHGICGANSICTYVPSYGRKCSCIVEHKMKDVTDWSLGCEPQFNLSCKNDDGFVVVSRAEFYGYDYGFFPNYTSQQCMDLCLRLCECIGFQLRYDNSVFNCYPKTILLNGYQSPSYVGDFYLRLPKSKLFSYKPPVDEFQSQCPEIMELQRTYIKNQENEKVKTILWFASGLGGIELICVIFVWCFLIRTQKNSNPETQGYVFAATGFKRFSYAELKKATGNFSEEIGRGAGGVVYKATLPDLRVAAVKRLAEATRGEAEFLAEASTIGRLNHMYLIEMWGYCAEGKHRLLVYEFMEHGSLAKNLSSKTLDFRKRFEIAVGTAKGLAYLHEECLEWVLHCDVKPENILLDSNYSPKVADFGLSKLLDRGQLPDSGFSRARGTRGYMAPEWVYNLPITSKVDVYSYGIVVWELVTGNNPMECVQAGESVGEREHRRMVTWMRGKTNDGDDVASGMLEIVDPSLCGDYDGGKMETLVKVALKCLREDRDERPSMGQVVEMLLSHENENV 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1569272 1571653 + Bda016141.1 Bda03g00196 3455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00196 793 SUPERFAMILY Protein kinase-like (PK-like) 483 785 IPR011009 -
Bda03g00196 793 CDD PAN_AP_plant 329 411 - -
Bda03g00196 793 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 205 IPR036426 -
Bda03g00196 793 CDD B_lectin 42 150 IPR001480 -
Bda03g00196 793 ProSiteProfiles Bulb-type lectin domain profile. 27 149 IPR001480 -
Bda03g00196 793 ProSitePatterns Protein kinases ATP-binding region signature. 513 535 IPR017441 GO:0005524
Bda03g00196 793 Gene3D Transferase(Phosphotransferase) domain 1 582 793 - -
Bda03g00196 793 Pfam Protein kinase domain 510 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00196 793 Gene3D Phosphorylase Kinase; domain 1 472 581 - -
Bda03g00196 793 Pfam D-mannose binding lectin 78 160 IPR001480 -
Bda03g00196 793 SMART blect_4 33 150 IPR001480 -
Bda03g00196 793 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 7 791 - -
Bda03g00196 793 Gene3D - 27 149 IPR036426 -
Bda03g00196 793 PIRSF SRK 1 793 IPR024171 GO:0004674
Bda03g00196 793 Pfam S-locus glycoprotein domain 235 310 IPR000858 GO:0048544
Bda03g00196 793 PANTHER OS07G0415500 PROTEIN 7 791 - -
Bda03g00196 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Bda03g00196 793 ProSiteProfiles Protein kinase domain profile. 507 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00196 793 SMART serkin_6 507 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00196 - - - jre:108987254 1026.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00196 Bda-Chr3:1569272 Bda15g00939 Bda-Chr15:17293773 4.52E-115 dispersed
Bda01g00578 Bda-Chr1:32802761 Bda03g00196 Bda-Chr3:1569272 1.36E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g702 . . . Bda03g00196 . . . Bma01g02260 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000774 3 4 0 1 3 3 3 3 3 3 1 2 2 2 3 3 3 2 2 2 3 3 4 3 4 3 2 6 0 11 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69523 PF00069 Pkinase 4.30E-51 CL0016 Bda PK