Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00202 ATGTCCATCATTTCCTTAGACGGTGATTTCAAGTCGAGCCAAAGAACAGAGGAGGAGGTCATGGCGATCTATGAGGACTGGCTTCTCAAGCACGGGAAGGTCTACAACGCTTTAGGCGAAAAGGATAAGAGATTTGATATTTTCAAACAGAATCTCAACTTCATCGACGGACGGAACTCCGAGAACCGGACTTTCAGACTGGGACTGAACAAGTTCGCCGATCTGACTAACGAGGAGTATAGGTCCATTTACCTAGGTTATAGGGCCAGCCGGAAAAAGAAGACGATGAAGACAAGCGATCGATACAAGCCAGGTGTCGGCGACAGTTTGCCGGACTACGTAGACTGGAGGGAACAAGGTGCCGTCGCCGAAGTCAAGGACCAAGGAAGCTGCGGTGATTGCTGGGCATTCTCGGCAATCGCTGCGGTTGAAGGGATAAACAAGATTGTCACTGGCGACATGATATCGCTGTCAGAACAGGAGCTGGTGGATTGCGATACTTCGTACAACCAAGGATGCGATGGGGGCCTCATGGACTATGCTTTTGAATTTATCATCAACAATGGCGGAATCGATTCCGAAACCGATTACCCTTACAAAGGATACGACGCCAGATGTGATCAAGCCCGGAGAAATGCTCATGTTGTTGCAATTGATTCATATGAGGACGTCCCTGTGAACGACGAGACAGTGCTGAAAAAGGCTGTTGCAAATCAGCCTGTGTCTGTCGCCATTGAAGGCGGGGGAAAGGATTTCCAGTTTTACGACTCGGGTATATTTACTGGACACTGTGAGACGGCTCTGGATCATGGAGTTACTGTCGTCGGATACGGAACGGAAAACGGCAAGGATTACTGGACTGTAAAAAACTCGTGGGGGTCGAGCTGGGGCGAGGTAGGTTATGTTCGAATGGAGAGAAACATTGGCGCCCCTGAAGGAAAATGTGGAATTGCAATGGAGGCTTCTTACCCTATAAAAGTAGGGCAGAACCCACCGAATCCAGGCCCATCTCCTCCTTCTCCGGTCAAACCTCCGACCGTTTGCGACGGCTACAGCACTTGTCCTGAGAGCAACACGTGCTGCTGCGTCTTTGAGTTCGGAAGATATTGTTTTTCATGGGGATGCTGCCCTCTCGACGGTGCCACTTGCTGTGACGACCATTACAGCTGCTGCCCCCATGACTATCCCGTCTGTAACGTTAACGAAGGGACATGTCTAATGGTAAGTCCGGTGATATATCTATCTTGTTTTAGGCTCTTTTGTACATTACTGTTTTTTTTCTTTAATTTTTTATTTTGTTTTTTACAGCGTAAGGATAGTCCATTTGGAATAAAGGCAACGAGGAGAACTCCTGCTAAACCTTACTGGGCAATCGAGGGTGGGGAGAAAAGGAGCAGTGATTGA 1404 48.43 MSIISLDGDFKSSQRTEEEVMAIYEDWLLKHGKVYNALGEKDKRFDIFKQNLNFIDGRNSENRTFRLGLNKFADLTNEEYRSIYLGYRASRKKKTMKTSDRYKPGVGDSLPDYVDWREQGAVAEVKDQGSCGDCWAFSAIAAVEGINKIVTGDMISLSEQELVDCDTSYNQGCDGGLMDYAFEFIINNGGIDSETDYPYKGYDARCDQARRNAHVVAIDSYEDVPVNDETVLKKAVANQPVSVAIEGGGKDFQFYDSGIFTGHCETALDHGVTVVGYGTENGKDYWTVKNSWGSSWGEVGYVRMERNIGAPEGKCGIAMEASYPIKVGQNPPNPGPSPPSPVKPPTVCDGYSTCPESNTCCCVFEFGRYCFSWGCCPLDGATCCDDHYSCCPHDYPVCNVNEGTCLMVSPVIYLSCFRLFCTLLFFFFNFLFCFLQRKDSPFGIKATRRTPAKPYWAIEGGEKRSSD 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1601024 1603042 - Bda016146.2 Bda03g00202 3461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00202 467 Gene3D Granulin 345 407 IPR037277 -
Bda03g00202 467 CDD Peptidase_C1A 111 324 IPR039417 -
Bda03g00202 467 Pfam Granulin 359 406 IPR000118 -
Bda03g00202 467 Gene3D Cysteine proteinases 6 327 - -
Bda03g00202 467 SMART GRAN_2 348 405 IPR000118 -
Bda03g00202 467 SMART Inhibitor_I29_2 24 80 IPR013201 -
Bda03g00202 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 285 304 IPR025661 -
Bda03g00202 467 SUPERFAMILY Cysteine proteinases 16 325 IPR038765 -
Bda03g00202 467 SMART pept_c1 110 325 IPR000668 GO:0006508|GO:0008234
Bda03g00202 467 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 10 355 - -
Bda03g00202 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 268 278 IPR025660 -
Bda03g00202 467 SUPERFAMILY Granulin repeat 345 379 - -
Bda03g00202 467 Pfam Cathepsin propeptide inhibitor domain (I29) 24 80 IPR013201 -
Bda03g00202 467 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 128 139 IPR000169 -
Bda03g00202 467 PANTHER CYSTEINE PROTEASE 10 355 - -
Bda03g00202 467 Pfam Papain family cysteine protease 110 325 IPR000668 GO:0006508|GO:0008234
Bda03g00202 467 PRINTS Papain cysteine protease (C1) family signature 128 143 IPR000668 GO:0006508|GO:0008234
Bda03g00202 467 PRINTS Papain cysteine protease (C1) family signature 270 280 IPR000668 GO:0006508|GO:0008234
Bda03g00202 467 PRINTS Papain cysteine protease (C1) family signature 285 291 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00202 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - pop:18104848 694.886
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01515 Bda03g00202 CCT
Bda01g01515 Bda03g00202 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01515 Bda-Chr1:50998471 Bda03g00202 Bda-Chr3:1601024 1.11E-127 dispersed
Bda02g00032 Bda-Chr2:1542372 Bda03g00202 Bda-Chr3:1601024 3.45E-123 dispersed
Bda03g00202 Bda-Chr3:1601024 Bda14g01450 Bda-Chr14:19515801 0 dispersed
Bda03g00202 Bda-Chr3:1601024 Bda15g00848 Bda-Chr15:13193259 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00202 Bda_Chr03 FPKM 128.079514 146.650894 200.537704 200.141922 39.661709 43.187893 43.548233 276.656708 272.485535