Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00204 GAAAAGCCCTACAGAGGTATACGGATGAGGAAATGGGGAAAGTGGGTGGCCGAGATTAGAGAGCCCAATAAAAGGTCGAGGATTTGGTTGGGTTCTTACTCCACCCCTATCGCCGCCGCTCGTGCGTACGACACCGCCGTCTTTTATCTCCGGGGACCATCCGCTCGCTTGAATTTTCCGGAGCTCATGATTGGAGAAGAGCAGCGGGGAGATTTGTCTGCCGATTCTATACGCAAAATGGCCACTGAAGTTGGGGCTAAAGTTGATGCCGTCCAAACAGCTCTGCATTCGTCGACGTCTGTTTCTACTCCGCCTCCGGAAAAGCCGGACTTGAACCAGTTTCCATGCCCCAACAGTTCAGACGAAGACTGA 372 52.96 EKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPELMIGEEQRGDLSADSIRKMATEVGAKVDAVQTALHSSTSVSTPPPEKPDLNQFPCPNSSDED 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1615397 1615768 + Bda016148.1 Bda03g00204 3463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00204 123 MobiDBLite consensus disorder prediction 93 123 - -
Bda03g00204 123 Pfam AP2 domain 4 52 IPR001471 GO:0003700|GO:0006355
Bda03g00204 123 Gene3D AP2/ERF domain 3 61 IPR036955 GO:0003700|GO:0006355
Bda03g00204 123 PRINTS Ethylene responsive element binding protein signature 4 15 IPR001471 GO:0003700|GO:0006355
Bda03g00204 123 PRINTS Ethylene responsive element binding protein signature 42 62 IPR001471 GO:0003700|GO:0006355
Bda03g00204 123 PIRSF PTI6 1 118 IPR017392 GO:0003700
Bda03g00204 123 CDD AP2 4 62 IPR001471 GO:0003700|GO:0006355
Bda03g00204 123 ProSiteProfiles AP2/ERF domain profile. 3 60 IPR001471 GO:0003700|GO:0006355
Bda03g00204 123 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 2 121 - -
Bda03g00204 123 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 2 121 - -
Bda03g00204 123 SUPERFAMILY DNA-binding domain 3 61 IPR016177 GO:0003677
Bda03g00204 123 SMART rav1_2 3 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00204 Bda-Chr3:1615397 Bda08g00591 Bda-Chr8:6021313 1.39E-25 dispersed
Bda03g00204 Bda-Chr3:1615397 Bda03g00206 Bda-Chr3:1623800 1.92E-90 proximal
Bda01g00574 Bda-Chr1:32744987 Bda03g00204 Bda-Chr3:1615397 1.55E-73 wgd
Bda11g01441 Bda-Chr11:19577032 Bda03g00204 Bda-Chr3:1615397 1.18E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15618 PF00847 AP2 2.00E-12 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00204 K09286 - csv:101219005 197.593