Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00205 ATGGCTGTGGAGCTCATGTTGGGTTTTGGTTGCGACGGTTTCTCTGCTAAAATGGACGAGTGTTCGACTGTCTCCGCCGTACAAGAGGCGGCCTCTGCGGGTATTCAGGGGGTTGAGAGTTTTCTTAGATTGATGTCTGATGGCTCCAATACGCAGTTTCAAGAGGCTTCTTCGAGTTCGAGGCCTGACGCTGTTGCCGACATGGTGGTCGATAAGTTCAAAAAGGTTATTTCGTTACTGGATCGGAACAGAACTGGCCACGCTCGCTTCCGAAGGGCTCCATCGGGGCCTCCGCCACAGCAGCGGCAGCCGGCGGAACAAGCTTCTGCTTTTAGAGCCTATTCTCGCACACCGGTGGCGCGTTTACCTCCTCTGCCACACGTTCCGCCCACTTTCCAATCTCGGATAAACTCTTCTCCCATGGCGGCAAAGAACGGGTCCGCAGAGGGAAAGGAAACTACTGTGACCACCATTACTTTTTCTCCTTCGCCGCCCGTTTCCGCGGCAAATTCGTTTATTTCGTCGCTAACGGGGGATTCTGAGAGTTTGCAACCTTCTTTATCCTCTGGGTTCCAGTTTACCTCGTCTACCGGAAAACCTCCTCTCTCTTCGTCTTTGATGAAGAGGAAGTGCAACTCTATGGATGATGCAGCTCTTAAATGTGGCTCACCTTCTTCGCGATGCCATTGTTCGAAGAAAAGCAGAAAAACCCGAATAAAGAGAGTGGTTAGAGTTCCTGCCGTCAGCCTGAAAATGGCAGATATTCCAGCCGACGATTATTCCTGGAGGAAGTACGGCCAAAAACCCATCAAAGGCTCTCCTCATCCAAGGTCTGAAACTTCTAAAACAACTGCTTGA 858 51.05 MAVELMLGFGCDGFSAKMDECSTVSAVQEAASAGIQGVESFLRLMSDGSNTQFQEASSSSRPDAVADMVVDKFKKVISLLDRNRTGHARFRRAPSGPPPQQRQPAEQASAFRAYSRTPVARLPPLPHVPPTFQSRINSSPMAAKNGSAEGKETTVTTITFSPSPPVSAANSFISSLTGDSESLQPSLSSGFQFTSSTGKPPLSSSLMKRKCNSMDDAALKCGSPSSRCHCSKKSRKTRIKRVVRVPAVSLKMADIPADDYSWRKYGQKPIKGSPHPRSETSKTTA 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1615820 1616772 - Bda016149.1 Bda03g00205 3464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00205 285 Gene3D WRKY domain 234 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda03g00205 285 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 109 278 - -
Bda03g00205 285 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 109 278 IPR044810 GO:0003700
Bda03g00205 285 MobiDBLite consensus disorder prediction 263 285 - -
Bda03g00205 285 SMART WRKY_cls 256 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda03g00205 285 MobiDBLite consensus disorder prediction 131 162 - -
Bda03g00205 285 ProSiteProfiles WRKY domain profile. 251 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda03g00205 285 SUPERFAMILY WRKY DNA-binding domain 253 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda03g00205 285 MobiDBLite consensus disorder prediction 85 162 - -
Bda03g00205 285 Pfam WRKY DNA -binding domain 258 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda03g00205 285 Pfam Plant zinc cluster domain 208 254 IPR018872 -
Bda03g00205 285 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 22 102 IPR044810 GO:0003700
Bda03g00205 285 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 22 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00205 - - - cmo:103493562 345.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00700 Bda-Chr1:34258875 Bda03g00205 Bda-Chr3:1615820 6.72E-43 dispersed
Bda03g00205 Bda-Chr3:1615820 Bda04g00267 Bda-Chr4:32616742 1.78E-74 dispersed
Bda03g00205 Bda-Chr3:1615820 Bda13g01302 Bda-Chr13:35252857 1.15E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g672 . Blo12g00965 . Bda03g00205 . . Bma04g00155 Bma01g02264 . . Cma01g01575 . . . . . . . . . . . . . . . . . . . . Cone4ag1861 Cone7ag1766 . . . Csa03g04408 Chy04g00294 . . . . . . Bpe04g00173 . . Sed08g0447 . . Cma09g00530 . . . . . Bhi09g02375 Tan01g3739 Cmetu04g1319 . Hepe01g2092 Mch11g0630 . . . . . . . . . . . Cme04g00334
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004656 1 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15619 PF10533 Plant_zn_clust 3.20E-15 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00205 Bda_Chr03 FPKM 4.628876 4.684026 11.943524 12.397487 64.211853 61.888523 61.122147 20.428593 18.897173