Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00206 ATGGAAGGAGAGTTCTGTTCTGGAGCTTCTTCTTCGACCTCTAGCACAGACCAGAAGATAAAGCAACAACTCCGGCGAGAAGAAAAGCCCTACAGAGGTATACGGATGAGGAAATGGGGAAAGTGGGTGGCCGAGATTAGAGAGCCCAATAAAAGGTCGAGGATTTGGTTGGGTTCTTACTCCACCCCTATCGCCGCCGCTCGTGCGTACGACACCGCCGTCTTTTATCTCCGGGGACCATCCGCTCGCTTGAATTTTCCGGAGCTCATGATTGGAGAAGAGCAGCGGGGAGATTTGTCTGCCGATTCTATACGCAAAATGGCCACTGAAGTTGGGGCTAAAGTTGATGCCGTCCAAACAGCTCTGCATTCGTCGACGTCTGTTTCTACTCCGCCTCCGGAAAAGCCGGACTTGAACCAGTTTCCATGCCCCAACAGTTCAGACGAAGACTGA 453 52.1 MEGEFCSGASSSTSSTDQKIKQQLRREEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPELMIGEEQRGDLSADSIRKMATEVGAKVDAVQTALHSSTSVSTPPPEKPDLNQFPCPNSSDED 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1623800 1624252 + Bda016151.1 Bda03g00206 3465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00206 150 MobiDBLite consensus disorder prediction 1 19 - -
Bda03g00206 150 PRINTS Ethylene responsive element binding protein signature 69 89 IPR001471 GO:0003700|GO:0006355
Bda03g00206 150 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Bda03g00206 150 MobiDBLite consensus disorder prediction 122 150 - -
Bda03g00206 150 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Bda03g00206 150 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Bda03g00206 150 MobiDBLite consensus disorder prediction 1 27 - -
Bda03g00206 150 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
Bda03g00206 150 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Bda03g00206 150 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Bda03g00206 150 Pfam AP2 domain 31 79 IPR001471 GO:0003700|GO:0006355
Bda03g00206 150 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 148 - -
Bda03g00206 150 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00574 Bda-Chr1:32744987 Bda03g00206 Bda-Chr3:1623800 1.41E-77 dispersed
Bda03g00206 Bda-Chr3:1623800 Bda11g01441 Bda-Chr11:19577032 2.82E-49 dispersed
Bda03g00204 Bda-Chr3:1615397 Bda03g00206 Bda-Chr3:1623800 1.92E-90 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15620 PF00847 AP2 3.10E-12 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00206 K09286 - pvy:116125671 213.001