Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00206 | ATGGAAGGAGAGTTCTGTTCTGGAGCTTCTTCTTCGACCTCTAGCACAGACCAGAAGATAAAGCAACAACTCCGGCGAGAAGAAAAGCCCTACAGAGGTATACGGATGAGGAAATGGGGAAAGTGGGTGGCCGAGATTAGAGAGCCCAATAAAAGGTCGAGGATTTGGTTGGGTTCTTACTCCACCCCTATCGCCGCCGCTCGTGCGTACGACACCGCCGTCTTTTATCTCCGGGGACCATCCGCTCGCTTGAATTTTCCGGAGCTCATGATTGGAGAAGAGCAGCGGGGAGATTTGTCTGCCGATTCTATACGCAAAATGGCCACTGAAGTTGGGGCTAAAGTTGATGCCGTCCAAACAGCTCTGCATTCGTCGACGTCTGTTTCTACTCCGCCTCCGGAAAAGCCGGACTTGAACCAGTTTCCATGCCCCAACAGTTCAGACGAAGACTGA | 453 | 52.1 | MEGEFCSGASSSTSSTDQKIKQQLRREEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDTAVFYLRGPSARLNFPELMIGEEQRGDLSADSIRKMATEVGAKVDAVQTALHSSTSVSTPPPEKPDLNQFPCPNSSDED | 150 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1623800 | 1624252 | + | Bda016151.1 | Bda03g00206 | 3465 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00206 | 150 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Bda03g00206 | 150 | PRINTS | Ethylene responsive element binding protein signature | 69 | 89 | IPR001471 | GO:0003700|GO:0006355 | |
Bda03g00206 | 150 | PRINTS | Ethylene responsive element binding protein signature | 31 | 42 | IPR001471 | GO:0003700|GO:0006355 | |
Bda03g00206 | 150 | MobiDBLite | consensus disorder prediction | 122 | 150 | - | - | |
Bda03g00206 | 150 | SUPERFAMILY | DNA-binding domain | 30 | 88 | IPR016177 | GO:0003677 | |
Bda03g00206 | 150 | SMART | rav1_2 | 30 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Bda03g00206 | 150 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Bda03g00206 | 150 | Gene3D | AP2/ERF domain | 30 | 88 | IPR036955 | GO:0003700|GO:0006355 | |
Bda03g00206 | 150 | ProSiteProfiles | AP2/ERF domain profile. | 30 | 87 | IPR001471 | GO:0003700|GO:0006355 | |
Bda03g00206 | 150 | CDD | AP2 | 31 | 89 | IPR001471 | GO:0003700|GO:0006355 | |
Bda03g00206 | 150 | Pfam | AP2 domain | 31 | 79 | IPR001471 | GO:0003700|GO:0006355 | |
Bda03g00206 | 150 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 10 | 148 | - | - | |
Bda03g00206 | 150 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 10 | 148 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00574 | Bda-Chr1:32744987 | Bda03g00206 | Bda-Chr3:1623800 | 1.41E-77 | dispersed | |
Bda03g00206 | Bda-Chr3:1623800 | Bda11g01441 | Bda-Chr11:19577032 | 2.82E-49 | dispersed | |
Bda03g00204 | Bda-Chr3:1615397 | Bda03g00206 | Bda-Chr3:1623800 | 1.92E-90 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15620 | PF00847 | AP2 | 3.10E-12 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00206 | K09286 | - | pvy:116125671 | 213.001 |