Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00208 ATGGCGATGATGCTGGACAACTGCGAAGGTATCCTACTGTCCTTGGACTCAAACAAATCAGTTCCTGCTCCGTTTCTGACCAAAACTTACCAGCTCGTCGACGATCCATCTTCCGATCACATTGTTTCGTGGGGAGAAGATGACGCTACCTTCATCGTTTGGCGGCCACCAGAGTTCGCTCGCGATCTTCTACCAAACTACTTCAAGCACAACAACTTCTCTAGCTTCGTTCGCCAACTCAATACTTACGGTTTCAGAAAGATCGTACCAGACAGATGGGAGTTTGCAAACGAGTTCTTCAGAAAAGGAGAAAAGCATTTGCTATGTGAAATCCATAGGAGAAAAACTGCTCAGTCACAAATACCCATCAGCCACCAACTCTATAATCCTCCTCTCGGCGTCCACAGTTTCTTCCCATTTCCAAACCGATTCAGTGACTCGCCGTCAGACTCGGACGATCCAGGAAATAATTGGAGCGAGTCACGACAGTTTTCTTCATCCCCAAGAGGAAATCGTGTAGGGTTATCATTTTGCAGAGGCGATACTCACAACTATAACACCTCAATTGCAGCCCTATCTGAGGATAATGAGAGACTCAAACGAAGCAACTCAGTTTTATTATCGGAACTCGCCCATATGAAAAGACTTTACAATGATATCATATATTTTGTTCAAAACCATGTGAAACCTGTTACTCCGAGTATTTCCTACCCTTCGAACCAGCTTTTTGGCTATTATTCAACGAACCCTAAAGAAGTTTCTTTAGCACATTTTTTCAACTCTCCCGATGCTACTTCGAAGAGCTCCATTACAACTCTTGAAGATGAATCCACCAGCCATTGCTCTATGACTAAACTGTTTGGTGCATCGCTTCAATCTAAGAAAAGATTGCACCCAGAACAATGCTATAATCTGATTAATATAGACACCATTAAAGCTCGGTTGAGCTTGGATAAAGAAGACTTGGAGCTGAATCTTATGCCTCCTTCTTCGTGA 996 43.27 MAMMLDNCEGILLSLDSNKSVPAPFLTKTYQLVDDPSSDHIVSWGEDDATFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFRKGEKHLLCEIHRRKTAQSQIPISHQLYNPPLGVHSFFPFPNRFSDSPSDSDDPGNNWSESRQFSSSPRGNRVGLSFCRGDTHNYNTSIAALSEDNERLKRSNSVLLSELAHMKRLYNDIIYFVQNHVKPVTPSISYPSNQLFGYYSTNPKEVSLAHFFNSPDATSKSSITTLEDESTSHCSMTKLFGASLQSKKRLHPEQCYNLINIDTIKARLSLDKEDLELNLMPPSS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1634465 1635569 + Bda016153.1 Bda03g00208 3467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00208 331 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bda03g00208 331 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bda03g00208 331 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bda03g00208 331 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bda03g00208 331 PANTHER BNAC06G00310D PROTEIN 12 330 - -
Bda03g00208 331 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bda03g00208 331 MobiDBLite consensus disorder prediction 146 171 - -
Bda03g00208 331 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 330 IPR027725 -
Bda03g00208 331 Coils Coil 189 209 - -
Bda03g00208 331 SUPERFAMILY Winged helix DNA-binding domain 22 114 IPR036390 -
Bda03g00208 331 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bda03g00208 331 Gene3D - 17 116 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00208 K09419 HSFF; heat shock transcription factor, other eukaryote - jre:108990343 434.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00571 Bda03g00208 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00208 Bda-Chr3:1634465 Bda08g01374 Bda-Chr8:54321700 1.45E-143 dispersed
Bda01g00571 Bda-Chr1:32718619 Bda03g00208 Bda-Chr3:1634465 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g752 Blo01g01525 . Bda01g00571 Bda03g00208 Bpe02g00432 Bpe04g00177 . Bma01g02269 Cmo05g00175 . Cma01g01832 Cma09g00239 Car01g01429 . Sed10g1244 Cpe06g00166 . Bhi04g00361 Tan02g1805 Cmetu03g2201 . Hepe08g1292 . Lcy13g2088 Cla08g01578 Cam08g2076 Cec08g1659 Cco08g1787 Clacu08g1762 . Cre08g1547 Cone4ag1583 Cone7ag1367 Cone17ag0846 Cone20ag0194 Lsi04g01548 Csa04g02421 . Cme03g02056 . . . . . Bpe05g00026 . . Sed01g2675 Cmo01g01891 Cmo09g00233 . Cma05g00178 Car05g00150 . Cpe11g00146 Cpe02g00187 Bhi09g03307 Tan01g4763 Cmetu07g0842 . Hepe01g1775 Mch11g0300 . Cla05g02052 Cam05g2203 Cec05g2220 Cco05g2263 Clacu05g2195 Cmu05g2061 Cre05g2189 Lsi08g01481 Csa02g01940 Chy07g00142 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01599 . 39 225 HSF AT4G17750 54.2 1.1e-53 208.0
Bda13g00480 . 9 207 HSF AT4G17750 51.4 5.8e-52 202.2
Bda01g02007 BCT 9 209 HSF AT4G17750 50.7 1.4e-50 197.6
Bda10g00559 . 42 242 HSF AT4G17750 51.4 1.9e-50 197.2
Bda01g02009 . 9 209 HSF AT4G17750 50.2 7.1e-50 195.3
Bda08g00255 . 21 220 HSF AT4G17750 50.7 6.7e-48 188.7
Bda01g00571 BCT 20 118 HSF AT4G17750 71.7 1.6e-38 157.5
Bda03g00208 BCT 20 118 HSF AT4G17750 70.7 4.8e-38 156.0
Bda08g01374 . 15 118 HSF AT4G17750 67.6 2.4e-37 153.7
Bda07g00962 . 12 109 HSF AT4G17750 68.4 2.6e-36 150.2
Bda08g00638 BCT 25 384 HSF AT5G16820 60.1 8.6e-101 364.4
Bda06g01262 BCT 22 332 HSF AT5G16820 66.3 2.3e-98 356.3
Bda10g00559 . 43 248 HSF AT5G16820 52.1 2.7e-54 209.9
Bda13g00480 . 11 206 HSF AT5G16820 52.6 5.1e-53 205.7
Bda13g01599 . 40 225 HSF AT5G16820 51.8 3.1e-50 196.4
Bda08g00255 . 22 220 HSF AT5G16820 51.4 5.5e-47 185.7
Bda06g01262 BCT 24 515 HSF AT1G32330 53.9 2.0e-118 422.9
Bda08g00638 BCT 27 515 HSF AT1G32330 52.3 5.2e-114 408.3
Bda13g00480 . 9 186 HSF AT1G32330 51.6 1.9e-47 187.2
Bda07g00962 . 4 107 HSF AT1G32330 68.3 4.7e-38 156.0
Bda01g00571 BCT 18 117 HSF AT1G32330 70.0 1.0e-37 154.8
Bda03g00208 BCT 18 120 HSF AT1G32330 68.0 1.4e-37 154.5
Bda08g01374 . 21 117 HSF AT1G32330 70.4 2.6e-36 150.2
Bda08g00638 BCT 37 517 HSF AT3G02990 50.2 1.7e-101 366.7
Bda10g00559 . 43 254 HSF AT3G02990 50.7 1.1e-55 214.5
Bda13g00480 . 11 209 HSF AT3G02990 52.4 2.9e-53 206.5
Bda13g01599 . 40 226 HSF AT3G02990 51.3 2.7e-51 199.9
Bda01g00571 BCT 8 133 HSF AT3G02990 58.9 7.7e-38 155.2
Bda07g00962 . 10 105 HSF AT3G02990 68.8 2.5e-36 150.2
Bda06g01262 BCT 28 244 HSF AT2G26150 54.1 2.5e-62 236.1
Bda10g00559 . 31 242 HSF AT2G26150 53.7 2.6e-59 226.1
Bda08g00638 BCT 37 237 HSF AT4G18880 51.5 6.0e-55 211.8
Bda13g00480 . 3 479 HSF AT4G13980 53.2 2.6e-126 449.1
Bda07g00962 . 13 110 HSF AT4G13980 76.5 2.8e-40 163.3
Bda08g00638 BCT 22 246 HSF AT3G22830 58.5 7.6e-66 248.1
Bda06g01262 BCT 16 243 HSF AT3G22830 57.0 6.4e-65 245.0
Bda13g01599 . 32 232 HSF AT3G22830 54.8 4.8e-60 228.8
Bda10g00559 . 31 316 HSF AT3G51910 52.8 1.7e-69 259.6
Bda06g01262 BCT 28 254 HSF AT3G51910 51.1 1.3e-53 206.8
Bda08g00638 BCT 31 246 HSF AT3G51910 51.9 4.9e-53 204.9
Bda11g01040 BCT 1 218 HSF AT3G51910 50.9 1.2e-51 200.3
Bda13g01599 . 32 232 HSF AT3G51910 52.5 4.3e-49 191.8
Bda01g02009 . 1 192 HSF AT3G51910 51.0 7.4e-49 191.0
Bda13g01599 . 32 225 HSF AT3G63350 50.7 7.9e-46 181.0
Bda01g02007 BCT 4 210 HSF AT5G54070 51.9 1.9e-51 199.9
Bda11g01040 BCT 4 210 HSF AT5G54070 51.9 7.3e-51 198.0
Bda01g02009 . 4 192 HSF AT5G54070 54.2 7.3e-51 198.0
Bda04g00268 . 2 285 HSF AT4G36990 51.6 2.0e-68 256.1
Bda06g00644 . 14 120 HSF AT4G36990 62.6 6.1e-38 154.8
Bda06g00674 . 14 120 HSF AT4G36990 62.6 6.1e-38 154.8
Bda03g00208 BCT 17 115 HSF AT5G62020 68.7 7.6e-39 157.9
Bda01g00571 BCT 16 119 HSF AT4G11660 75.0 4.0e-45 179.1
Bda03g00208 BCT 16 118 HSF AT4G11660 73.8 1.3e-43 174.1
Bda08g01374 . 17 122 HSF AT4G11660 72.9 1.3e-43 174.1
Bda03g00610 . 17 114 HSF AT4G11660 71.4 4.8e-38 155.6
Bda03g00612 . 14 111 HSF AT4G11660 71.4 4.8e-38 155.6
Bda03g00610 . 21 216 HSF AT2G41690 56.5 1.4e-46 183.3
Bda03g00612 . 18 213 HSF AT2G41690 56.5 1.4e-46 183.3
Bda01g00571 BCT 1 342 HSF AT1G46264 55.0 2.4e-92 335.9
Bda03g00208 BCT 1 331 HSF AT1G46264 53.4 1.0e-87 320.5
Bda08g01374 . 2 341 HSF AT1G46264 53.0 2.3e-87 319.3
Bda06g00644 . 17 115 HSF AT1G46264 71.7 2.5e-41 166.4
Bda06g00674 . 17 115 HSF AT1G46264 71.7 2.5e-41 166.4
Bda06g01262 BCT 33 137 HSF AT1G46264 70.5 4.7e-40 162.2
Bda08g00638 BCT 36 141 HSF AT1G46264 69.8 1.4e-39 160.6
Bda13g00480 . 1 115 HSF AT1G46264 62.6 1.5e-38 157.1
Bda03g00610 . 18 115 HSF AT1G46264 69.4 2.6e-38 156.4
Bda03g00612 . 15 112 HSF AT1G46264 69.4 2.6e-38 156.4
Bda08g00255 . 21 116 HSF AT1G46264 70.8 1.8e-36 150.2
Bda13g01599 . 39 225 HSF AT4G17750 54.2 1.1e-53 208.0
Bda13g00480 . 9 207 HSF AT4G17750 51.4 5.8e-52 202.2
Bda01g02007 BCT 9 209 HSF AT4G17750 50.7 1.4e-50 197.6
Bda10g00559 . 42 242 HSF AT4G17750 51.4 1.9e-50 197.2
Bda01g02009 . 9 209 HSF AT4G17750 50.2 7.1e-50 195.3
Bda08g00255 . 21 220 HSF AT4G17750 50.7 6.7e-48 188.7
Bda01g00571 BCT 20 118 HSF AT4G17750 71.7 1.6e-38 157.5
Bda03g00208 BCT 20 118 HSF AT4G17750 70.7 4.8e-38 156.0
Bda08g01374 . 15 118 HSF AT4G17750 67.6 2.4e-37 153.7
Bda07g00962 . 12 109 HSF AT4G17750 68.4 2.6e-36 150.2
Bda08g00638 BCT 25 384 HSF AT5G16820 60.1 8.6e-101 364.4
Bda06g01262 BCT 22 332 HSF AT5G16820 66.3 2.3e-98 356.3
Bda10g00559 . 43 248 HSF AT5G16820 52.1 2.7e-54 209.9
Bda13g00480 . 11 206 HSF AT5G16820 52.6 5.1e-53 205.7
Bda13g01599 . 40 225 HSF AT5G16820 51.8 3.1e-50 196.4
Bda08g00255 . 22 220 HSF AT5G16820 51.4 5.5e-47 185.7
Bda06g01262 BCT 24 515 HSF AT1G32330 53.9 2.0e-118 422.9
Bda08g00638 BCT 27 515 HSF AT1G32330 52.3 5.2e-114 408.3
Bda13g00480 . 9 186 HSF AT1G32330 51.6 1.9e-47 187.2
Bda07g00962 . 4 107 HSF AT1G32330 68.3 4.7e-38 156.0
Bda01g00571 BCT 18 117 HSF AT1G32330 70.0 1.0e-37 154.8
Bda03g00208 BCT 18 120 HSF AT1G32330 68.0 1.4e-37 154.5
Bda08g01374 . 21 117 HSF AT1G32330 70.4 2.6e-36 150.2
Bda08g00638 BCT 37 517 HSF AT3G02990 50.2 1.7e-101 366.7
Bda10g00559 . 43 254 HSF AT3G02990 50.7 1.1e-55 214.5
Bda13g00480 . 11 209 HSF AT3G02990 52.4 2.9e-53 206.5
Bda13g01599 . 40 226 HSF AT3G02990 51.3 2.7e-51 199.9
Bda01g00571 BCT 8 133 HSF AT3G02990 58.9 7.7e-38 155.2
Bda07g00962 . 10 105 HSF AT3G02990 68.8 2.5e-36 150.2
Bda06g01262 BCT 28 244 HSF AT2G26150 54.1 2.5e-62 236.1
Bda10g00559 . 31 242 HSF AT2G26150 53.7 2.6e-59 226.1
Bda08g00638 BCT 37 237 HSF AT4G18880 51.5 6.0e-55 211.8
Bda13g00480 . 3 479 HSF AT4G13980 53.2 2.6e-126 449.1
Bda07g00962 . 13 110 HSF AT4G13980 76.5 2.8e-40 163.3
Bda08g00638 BCT 22 246 HSF AT3G22830 58.5 7.6e-66 248.1
Bda06g01262 BCT 16 243 HSF AT3G22830 57.0 6.4e-65 245.0
Bda13g01599 . 32 232 HSF AT3G22830 54.8 4.8e-60 228.8
Bda10g00559 . 31 316 HSF AT3G51910 52.8 1.7e-69 259.6
Bda06g01262 BCT 28 254 HSF AT3G51910 51.1 1.3e-53 206.8
Bda08g00638 BCT 31 246 HSF AT3G51910 51.9 4.9e-53 204.9
Bda11g01040 BCT 1 218 HSF AT3G51910 50.9 1.2e-51 200.3
Bda13g01599 . 32 232 HSF AT3G51910 52.5 4.3e-49 191.8
Bda01g02009 . 1 192 HSF AT3G51910 51.0 7.4e-49 191.0
Bda13g01599 . 32 225 HSF AT3G63350 50.7 7.9e-46 181.0
Bda01g02007 BCT 4 210 HSF AT5G54070 51.9 1.9e-51 199.9
Bda11g01040 BCT 4 210 HSF AT5G54070 51.9 7.3e-51 198.0
Bda01g02009 . 4 192 HSF AT5G54070 54.2 7.3e-51 198.0
Bda04g00268 . 2 285 HSF AT4G36990 51.6 2.0e-68 256.1
Bda06g00644 . 14 120 HSF AT4G36990 62.6 6.1e-38 154.8
Bda06g00674 . 14 120 HSF AT4G36990 62.6 6.1e-38 154.8
Bda03g00208 BCT 17 115 HSF AT5G62020 68.7 7.6e-39 157.9
Bda01g00571 BCT 16 119 HSF AT4G11660 75.0 4.0e-45 179.1
Bda03g00208 BCT 16 118 HSF AT4G11660 73.8 1.3e-43 174.1
Bda08g01374 . 17 122 HSF AT4G11660 72.9 1.3e-43 174.1
Bda03g00610 . 17 114 HSF AT4G11660 71.4 4.8e-38 155.6
Bda03g00612 . 14 111 HSF AT4G11660 71.4 4.8e-38 155.6
Bda03g00610 . 21 216 HSF AT2G41690 56.5 1.4e-46 183.3
Bda03g00612 . 18 213 HSF AT2G41690 56.5 1.4e-46 183.3
Bda01g00571 BCT 1 342 HSF AT1G46264 55.0 2.4e-92 335.9
Bda03g00208 BCT 1 331 HSF AT1G46264 53.4 1.0e-87 320.5
Bda08g01374 . 2 341 HSF AT1G46264 53.0 2.3e-87 319.3
Bda06g00644 . 17 115 HSF AT1G46264 71.7 2.5e-41 166.4
Bda06g00674 . 17 115 HSF AT1G46264 71.7 2.5e-41 166.4
Bda06g01262 BCT 33 137 HSF AT1G46264 70.5 4.7e-40 162.2
Bda08g00638 BCT 36 141 HSF AT1G46264 69.8 1.4e-39 160.6
Bda13g00480 . 1 115 HSF AT1G46264 62.6 1.5e-38 157.1
Bda03g00610 . 18 115 HSF AT1G46264 69.4 2.6e-38 156.4
Bda03g00612 . 15 112 HSF AT1G46264 69.4 2.6e-38 156.4
Bda08g00255 . 21 116 HSF AT1G46264 70.8 1.8e-36 150.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002351 3 2 1 1 3 2 2 1 2 2 2 2 3 2 2 3 2 2 3 1 2 2 2 2 2 2 2 3 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15621 PF00447 HSF_DNA-bind 1.10E-31 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00208 Bda_Chr03 FPKM 4.715827 4.136572 2.302232 2.871761 0.0 0.0 0.328476 0.537623 1.040332