Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00209 ATGGAGCTGGCGGAGCAGCTGAAGTCGGAGGATCAGATGGAGATAATGATGATGATGATGCATCAAACGGACAAAAACCAAGCATTTTGCGGCGCCTACAATGATATCACTGAATTTTCACCGTCTGATTATGCTGGTTCGAGCGGCTGTAATAACACCACTGCCATCCCGCATTGTTCAGACAGCCTCCAACAGTCGTCTCATTCTTTCATAAATTTTCCTTTGTCTTCTTCTTTGGCGAACAATGGTTCTTCGTTATCGGCAGAGACGCAGGCGCCATTTTTATCCAGGTGGGGAGGTGAATTATCCAGCGGTGAAAATGGCTTCTTCTCTTCACCTGATTCTGAAAGACCTAATTCAATGGCCACAATGAGGGAGATGATTTTCCGAATTGCAGCGATGCAGCCAATTCATATAGACCCAGAATCGGTGAAGCCGCCGAAACGGAGGAACGTGAAGATATCGAAAGACCCACAAAGCGTAGCGGCTAGGCACCGGAGAGAGAAGATAAGTGAGAGAATCAGAATTCTTCAGAGGCTAGTACCAGGTGGGACGAAAATGGATACAGCTTCCATGTTGGACGAAGCTATTCATTACGTTAAATTCTTGAAGGGCCAAGTGCAGTCCTTGGAGAGAGCTGCAGTTAACAGGCCGGCTGGTTTAGAGTATCCCATTGCAGTCTCTAATGGCGGAAGCTATTTTCCTGTGGCAAAGGATTGCCAATTCCCTCGTCGAATTTAG 741 46.96 MELAEQLKSEDQMEIMMMMMHQTDKNQAFCGAYNDITEFSPSDYAGSSGCNNTTAIPHCSDSLQQSSHSFINFPLSSSLANNGSSLSAETQAPFLSRWGGELSSGENGFFSSPDSERPNSMATMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRREKISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKGQVQSLERAAVNRPAGLEYPIAVSNGGSYFPVAKDCQFPRRI 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1641488 1642228 + Bda016154.1 Bda03g00209 3468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00209 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 213 IPR036638 GO:0046983
Bda03g00209 246 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 5 241 IPR045843 GO:0003700|GO:0006355
Bda03g00209 246 Pfam Helix-loop-helix DNA-binding domain 164 203 IPR011598 GO:0046983
Bda03g00209 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Bda03g00209 246 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 5 241 - -
Bda03g00209 246 Gene3D - 153 219 IPR036638 GO:0046983
Bda03g00209 246 CDD bHLH_AtIND_like 155 211 - -
Bda03g00209 246 SMART finulus 160 209 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00569 Bda03g00209 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00209 Bda-Chr3:1641488 Bda08g01375 Bda-Chr8:54326517 3.10E-63 dispersed
Bda03g00472 Bda-Chr3:4069235 Bda03g00209 Bda-Chr3:1641488 2.78E-06 dispersed
Bda01g00158 Bda-Chr1:22494252 Bda03g00209 Bda-Chr3:1641488 4.77E-11 transposed
Bda04g00329 Bda-Chr4:47712302 Bda03g00209 Bda-Chr3:1641488 2.02E-43 transposed
Bda01g00569 Bda-Chr1:32705315 Bda03g00209 Bda-Chr3:1641488 1.97E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15622 PF00010 HLH 1.60E-06 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00209 - - tcc:18591179 255.373