Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00210 ATGAAAAAGAACGTCGTCTCATCTCGTTGGTATGACCCGCTTCCAGATACAGAAGCACCGCACTCTAGGTTCGCAAATGTTAAAGTGCAGAAAGGTTGGAGCTCAGAGAGAGTTCCATCGGCCAGTCGGAAGAGTGTGACTTCAGCGTCATTGGCTTTTAATAATGGGAGAACATTGCCATCAAAATGGGAAGATGCTGAGAGGTGGATTTTCAGTCCAGCTTCCAGAGATGATGCTATTAGCACATCACTTCCACCACCTCAGCGGAGGGCAAAATCCAAAAGCGGGCCACTTGGTTGTCCTGGAGAATCATTCAATTCCTTGCATTCGCCGGCTACTTTGATGTTTGAAGCTAAGAATGCAGGGAATTTCATCGTGGATTCACCGCTTTCAGATGGCGTAATATCAACGAACGGGCTACCTTTTAATTTTCGTAACCATGGGAATGGGCGAACAGAGCCCTGTATGACGCGCTCAGTTAGCTTACATGCTTTCTCTCAGACTCGGTCTACATTTGCTTCTCTTCAAGGTACAACAGGAAATCTGGATGTGTCCAAAGGGGCCATTTCAAGAAGGGACATTGCAACGCAGATAACGGCAGAGGATAACGCTTCCTCAACTACCGAAAGTACGCCCTCTACCTCTACCTGTACGCCCTCTACCTCTACCTCTATTCCTTTCACACTGGAGCTGAAGAATATGCGATCTTCCAAAGTAGAAGTTAGAGATGTTCAAGTAGATAAGCAAGTAACGATGAAGAGGGGGTGTGAAAAAGAAAAAATTCGCCTAGCAAGGAAGGGTAAAGCAGATGGCTGGCTTAGCAAAGATAAGGATTTAGATTCTCGATCTTGGAACGTCTCTGACACAGCGAAAAGCATCTTAAAGTTCACAAGAGAGGAAGCAAAGGTTACTGCTTGGGAGAATTTGCAAAAGGCAAAAGCTGAGGCATCTATAAGAAAGCTCGAGATGAAGCTGGAAAAAAGAAGATCATCGTCAATGGATAAGATTATGAAGAAGCTGAGATCTTCCCAGAGGCGAGCCCAAGAAATGAGGAGCTCAATTTTGGTCACCAAGGCTCATAAAGTTGCCAGGACATCGCATAAAGCTTTATCTTTTCGCAGAGCGCATCAGAAAAGTTCTTTAAGTGGCTGTTTTACCTGTTATGCCATCTAG 1173 45.1 MKKNVVSSRWYDPLPDTEAPHSRFANVKVQKGWSSERVPSASRKSVTSASLAFNNGRTLPSKWEDAERWIFSPASRDDAISTSLPPPQRRAKSKSGPLGCPGESFNSLHSPATLMFEAKNAGNFIVDSPLSDGVISTNGLPFNFRNHGNGRTEPCMTRSVSLHAFSQTRSTFASLQGTTGNLDVSKGAISRRDIATQITAEDNASSTTESTPSTSTCTPSTSTSIPFTLELKNMRSSKVEVRDVQVDKQVTMKRGCEKEKIRLARKGKADGWLSKDKDLDSRSWNVSDTAKSILKFTREEAKVTAWENLQKAKAEASIRKLEMKLEKRRSSSMDKIMKKLRSSQRRAQEMRSSILVTKAHKVARTSHKALSFRRAHQKSSLSGCFTCYAI 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1648869 1650959 - Bda016155.1 Bda03g00210 3469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00210 390 PANTHER REMORIN FAMILY PROTEIN 15 388 - -
Bda03g00210 390 MobiDBLite consensus disorder prediction 197 224 - -
Bda03g00210 390 Pfam Remorin, C-terminal region 281 378 IPR005516 -
Bda03g00210 390 Coils Coil 311 331 - -
Bda03g00210 390 MobiDBLite consensus disorder prediction 1 22 - -
Bda03g00210 390 PANTHER OS02G0116800 PROTEIN 15 388 - -
Bda03g00210 390 MobiDBLite consensus disorder prediction 77 104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00210 - - - vvi:100257562 389.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00210 Bda-Chr3:1648869 Bda08g01376 Bda-Chr8:54328590 3.00E-126 dispersed
Bda03g00210 Bda-Chr3:1648869 Bda04g00247 Bda-Chr4:19264816 3.02E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g756 . Blo12g00958 . Bda03g00210 . . Bma04g00162 . Cmo05g00178 Cmo12g00500 . Cma09g00233 . Car12g00511 Sed11g0942 . . Bhi04g00359 Tan02g1815 Cmetu03g0006 . Hepe08g1289 . Lcy13g2086 Cla08g01576 Cam08g2074 Cec08g1654 Cco08g1785 Clacu08g1761 . Cre08g1545 Cone4ag1581 Cone7ag1370 Cone17ag0845 Cone20ag0193 Lsi04g01558 Csa04g02412 . Cme03g02054 Blo17g00880 . . . . Bpe05g00024 . Bma05g00037 Sed13g1753 . Cmo09g00226 Cma12g00556 . Car05g00152 . . . Bhi09g03315 Tan01g4778 Cmetu07g0900 . . . . Cla05g02044 Cam05g2194 Cec05g2212 Cco05g2257 Clacu05g2188 Cmu05g2054 Cre05g2183 Lsi08g01479 Csa02g01942 Chy07g00136 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024553 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00210 Bda_Chr03 FPKM 1.813414 1.943729 3.417632 3.369248 2.043817 2.216496 2.046064 5.178244 3.976107