Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00211 ATGAACTTCAAGAATTTTGGGTATGCTCCGCCGGCTGAAAACAGCTATTCAAGTGGTGGAAGATTGCTGGGGGATTTTCCGTTGACGAAACAATTGTCGATGACGATTGATGAATTACAGAGCACCTTGGGAGGAGGGACGGAGAAGGACTTTGGTTCCATGAATATGGATGAGCTATTAAAGAATATTTGGAGTGCCGAAGAGACACAAACCATCGTGCCGTGCAGCACTGCAGCTGGGCAACAAGGTTGTGGGAATTCTAATGTGTATTTACAAAAGCAGGGCTCCTTGACACTGCCTCGAACACTCAGCCAGAAAACGGTGGAAGAGGTGTGGAGGGATTTATCAAAAGTAGATGATTTAGGGAAAGGTGGAAATGGTGATGTTTTGTCTAATGATATTCCACAGAGACAACAAACTTTGGGGGAGATGACTTTGGAAGAGTTCTTGTACAAAGCTGGTGTTGTGAGACAGGATAACCATTTTACAGAAAAGACTAATAATGGTGGATTTTTTGGCAACATAAATTGTTTAGGAATCGATTTTCAGAAGCCAGATTCGAACACACCATTAGTAGGTAATAGAATTGCAGATACCAACAGTCAAATGTCAATTCTGTCTTCAAATTTACCTTTAAATGTTAATGGGGTTAGAACGAAGCATCAACAACAGAAGATTTTCCACAAACAACCTACTGTAACATATGGACAACTGCCTTTATCAAGTAGTGGTGCTCAGTTGGAAAATCCAAGAGAGGCAATTGCAAATTTTGCAGATCACGGCTTGAATTCCACTGTAAGCCAAATGTCTACCGTGCAAAGTGGAGGTACAGGAGTGATTGGCTTAAAAGGTGGGCATGTTAATGTTGAAAGAGTATCTCCAGGAAACCAAGTTTCATCAGATGGAATTCGGAAGAGTAATGGCGATATCTCTTCCATCTCTTCCGTACCTTACATGTTTAATGGTGGAGTAAGAGGGAGGAGGTCAAGTGGGACAGTGGAGAAGGCTGCAGAGAGGAGACATAAGAGAATGATTAAAAACAGAGAATCTGCAGCAAGGTCTCGAGCCCGCAAGCAGGCTTACACAACGGAACTGGAAGCTGAAGTTGCAAATCTTAAGGAGGAGAACGGAGCATTGCAGAAAAAACAGGTGCTCTAG 1158 42.66 MNFKNFGYAPPAENSYSSGGRLLGDFPLTKQLSMTIDELQSTLGGGTEKDFGSMNMDELLKNIWSAEETQTIVPCSTAAGQQGCGNSNVYLQKQGSLTLPRTLSQKTVEEVWRDLSKVDDLGKGGNGDVLSNDIPQRQQTLGEMTLEEFLYKAGVVRQDNHFTEKTNNGGFFGNINCLGIDFQKPDSNTPLVGNRIADTNSQMSILSSNLPLNVNGVRTKHQQQKIFHKQPTVTYGQLPLSSSGAQLENPREAIANFADHGLNSTVSQMSTVQSGGTGVIGLKGGHVNVERVSPGNQVSSDGIRKSNGDISSISSVPYMFNGGVRGRRSSGTVEKAAERRHKRMIKNRESAARSRARKQAYTTELEAEVANLKEENGALQKKQVL 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1662543 1664086 - Bda016157.1 Bda03g00211 3470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00211 385 Gene3D - 337 384 - -
Bda03g00211 385 MobiDBLite consensus disorder prediction 331 358 - -
Bda03g00211 385 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 15 383 IPR043452 GO:0003700|GO:0045893
Bda03g00211 385 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 337 382 IPR004827 GO:0003700|GO:0006355
Bda03g00211 385 SUPERFAMILY Leucine zipper domain 339 382 IPR046347 GO:0003700|GO:0006355
Bda03g00211 385 Coils Coil 355 382 - -
Bda03g00211 385 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 342 357 IPR004827 GO:0003700|GO:0006355
Bda03g00211 385 MobiDBLite consensus disorder prediction 323 358 - -
Bda03g00211 385 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 15 383 - -
Bda03g00211 385 CDD bZIP_plant_BZIP46 339 385 - -
Bda03g00211 385 Pfam bZIP transcription factor 337 382 IPR004827 GO:0003700|GO:0006355
Bda03g00211 385 SMART brlzneu 335 384 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00211 K14432 ABF; ABA responsive element binding factor - jre:118343674 385.571
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01610 Bda03g00211 CCT
Bda01g01610 Bda03g00211 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00211 Bda-Chr3:1662543 Bda15g00035 Bda-Chr15:1807030 2.97E-75 dispersed
Bda11g01822 Bda-Chr11:53469043 Bda03g00211 Bda-Chr3:1662543 1.15E-07 dispersed
Bda01g01610 Bda-Chr1:51974261 Bda03g00211 Bda-Chr3:1662543 4.74E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g759 Blo01g01529 . . Bda03g00211 . . Bma04g00163 Bma01g02274 Cmo05g00179 Cmo12g00499 . . . Car12g00510 Sed10g2023 . Cpe07g00488 Bhi04g00358 Tan02g0922 Cmetu01g1641 . Hepe08g1288 . Lcy13g2085 Cla08g01575 . Cec08g1653 Cco08g1784 Clacu08g1760 . Cre08g1544 . . . . . . . Cme03g02053 . . . Bda01g01610 Bpe02g01800 . . . . . . . Cma05g00180 Car05g00153 . Cpe11g00148 . . . . . . . . . . . . . . . . Csa02g01943 Chy03g01549 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004657 2 1 2 3 1 0 2 1 1 1 1 1 0 1 1 2 1 3 2 1 1 2 1 1 1 0 1 6 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15623 PF00170 bZIP_1 2.00E-12 CL0018 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00211 Bda_Chr03 FPKM 7.305104 9.783168 5.766576 5.801736 15.499389 11.970094 13.087337 4.699413 4.439225