Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00225 TATAGGATGCAGTCGGACGGTTCTGATGCGCAGACGGCGCAGCAACCGGAGCAGAATCAGCGGCAACAATCGCAGCCACCGCCACAGCAGTGGATGGCCATGCAGTATCCGGCGGCGGCGATGGTAATGCAGCATCAGATGATGCGGCATCAGCATTACGTTCCGTCCATACCGCCGCATTACGTGCCGTACCATCAGTTTCAGCCGTACCATCCGCTAGTGCAACAAGGTCAGCAACATCACCAAGGATCTTCCGGCGAGAACAAGACGCTATGGATTGGCGATTTGCACCTTTGGATGGACGAGAATTACCTCCATGATTGCTTCGCTTATACTGGCGAGATTTCTTCCATTAAGGTTATTCGAAATAAACAGTCTGGTTTATCAGAAGGCTATGGATTTGTGGAATTTTTGTCCCACGCAACAGCTGAGAAAGTTCTGCAGAAGTACAGTGGCATTTGTATGCCAACTACAGAACAACCTTTTCGCCTTAACTGGGCGGCATTTAGCTCGGGAGAAAAGCGTTCGGATAATGGTCCTGATCTTTCTATTTTCGTAGGAGATTTAGCAGCAGATGTTAATGACACTTTATTGCGTGAAACTTTTGCTGGTAAATTTCCATCAGTTAAGGCTGCAAAAGTCGTTTTTGATGCCAACACTGGTCGTTCAAAGGGTTATGGTTTTGTGAGGTTTGGAGATGATAATGAGAGGTCACAGGCTATGACAGAGATGAATGGCGCTTATTGTTCGAGCAGGCCTATGCGCATTGGTGCAGCAACGCCAAGGAAGTCCTCTGTATACTCGCAGCAATTTTCCTCTCTAGGAGGATATGGATTAAACAGTTCCTTCACTCAGGGTTTTCAATCTGACGCTGATTCAACAAACACAACAATATTTGTTGGAGGGCTTGATCCTAATGCCAGTGATGAAGATCTTAGGCAGCCTTTCTCTGAATACGGGGAGATAGTTTCTGTCAAAATACCCGTAGGAAAAGGATGCGGGTTCGTGCAATTTGCCAGCAGAAACAATGCCGAGGAGGCTTTACAGAAACTAAACGGTACCCAGGTGAGAGGAGAATTCGGCAACCAGTGGAATGGAGCATACTATGGAGGACAGGTTTACGATGGATATGGATACGCCATGGCTTCCCCACACGATCCCGGGATGTATGCTGCATCTGCTGCAATGTATGGAGCTTATCCTTTCTATGGAACCCATCAAGAGCAAGTAAATGTAAGGCTATTTGATTGCGTTGATTTTTCAATTGCATCGTCTTGCTTGTTTTCTGAAATATTAATTGGCTATGAAGGTGGGCATGATTCGATTTTTTCAGATTCGAAGATGAACAGTAGAGGGAGGAATAGGTTACAGACTCTGAAATCTTCCAAGAATGAAGAGGATAATGTGGAGATTCTGGAAACTAAGTTAAGGAATGGTGCTGCTAAAGAAACTTCAAGTGGACGAGTTTCGAGGGGAGAGAGAAAACAAGCTCTGCAAAAAGACATTGATAAGCTAAAGAAGAAGCTGAGACAGGAAGAGAACATACAGAGAGCTTTGAAGAGGGCTTCCACAAGACCTTTGGGAGCTTTACCTCGTCTCCCTCCTTTCCTCCCTCCATATATGATAGAGCTGATTGCAGTAGTAGCTGTTTTGGAGGAGGAGATTGTTCGACTTGAACAACAGGTTGTTCATTTTAGGAAAAACTTGGATCAGGAAGCTGTAAATTTGTCATTTTCAAAGAAGGTCAAAGAAAATTTATCTGGTTTATATGAGCCTTACTTGGTACATAATTCTAAAGTCATAGAGTCCAAGCGTTTAGCTCAGAATTCGGCAAATTCTACGACAAATTCACCATCTGTGTCTGGTTTGTTTCTTCATTGA 1881 44.5 YRMQSDGSDAQTAQQPEQNQRQQSQPPPQQWMAMQYPAAAMVMQHQMMRHQHYVPSIPPHYVPYHQFQPYHPLVQQGQQHHQGSSGENKTLWIGDLHLWMDENYLHDCFAYTGEISSIKVIRNKQSGLSEGYGFVEFLSHATAEKVLQKYSGICMPTTEQPFRLNWAAFSSGEKRSDNGPDLSIFVGDLAADVNDTLLRETFAGKFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGAYCSSRPMRIGAATPRKSSVYSQQFSSLGGYGLNSSFTQGFQSDADSTNTTIFVGGLDPNASDEDLRQPFSEYGEIVSVKIPVGKGCGFVQFASRNNAEEALQKLNGTQVRGEFGNQWNGAYYGGQVYDGYGYAMASPHDPGMYAASAAMYGAYPFYGTHQEQVNVRLFDCVDFSIASSCLFSEILIGYEGGHDSIFSDSKMNSRGRNRLQTLKSSKNEEDNVEILETKLRNGAAKETSSGRVSRGERKQALQKDIDKLKKKLRQEENIQRALKRASTRPLGALPRLPPFLPPYMIELIAVVAVLEEEIVRLEQQVVHFRKNLDQEAVNLSFSKKVKENLSGLYEPYLVHNSKVIESKRLAQNSANSTTNSPSVSGLFLH 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1737678 1745355 + Bda016169.1 Bda03g00225 3484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00225 626 Gene3D - 88 168 IPR012677 -
Bda03g00225 626 SMART rrm1_1 297 361 IPR000504 GO:0003723
Bda03g00225 626 SMART rrm1_1 90 165 IPR000504 GO:0003723
Bda03g00225 626 SMART rrm1_1 183 257 IPR000504 GO:0003723
Bda03g00225 626 Gene3D - 280 362 IPR012677 -
Bda03g00225 626 SUPERFAMILY RNA-binding domain, RBD 58 167 IPR035979 GO:0003676
Bda03g00225 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 359 IPR000504 GO:0003723
Bda03g00225 626 Coils Coil 541 568 - -
Bda03g00225 626 CDD RRM2_SECp43_like 181 260 - -
Bda03g00225 626 Gene3D - 181 257 IPR012677 -
Bda03g00225 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 261 IPR000504 GO:0003723
Bda03g00225 626 CDD RRM1_SECp43_like 90 170 - -
Bda03g00225 626 Pfam Leucine-zipper of ternary complex factor MIP1 493 572 IPR025757 -
Bda03g00225 626 SUPERFAMILY RNA-binding domain, RBD 181 358 IPR035979 GO:0003676
Bda03g00225 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 358 IPR000504 GO:0003723
Bda03g00225 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 156 IPR000504 GO:0003723
Bda03g00225 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 254 IPR000504 GO:0003723
Bda03g00225 626 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 24 410 - -
Bda03g00225 626 Coils Coil 495 525 - -
Bda03g00225 626 MobiDBLite consensus disorder prediction 607 626 - -
Bda03g00225 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 169 IPR000504 GO:0003723
Bda03g00225 626 MobiDBLite consensus disorder prediction 1 29 - -
Bda03g00225 626 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 24 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00225 - - - cit:102622145 586.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00225 Bda-Chr3:1737678 Bda08g00827 Bda-Chr8:12514962 5.36E-09 dispersed
Bda14g01230 Bda-Chr14:12534568 Bda03g00225 Bda-Chr3:1737678 2.44E-19 transposed
Bda01g00562 Bda-Chr1:32626186 Bda03g00225 Bda-Chr3:1737678 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g817 . Blo12g00945 . Bda03g00225 Bpe02g00421 Bpe04g00192 . . . . Cma01g01862 Cma09g00212 Car01g01450 . . Cpe06g00146 . . . . . . . . . . . . . . . Cone4ag1558 . . . Lsi04g01584 Csa04g02384 . . . . . . . . . . Sed01g2644 Cmo01g01920 . . . . Car09g00179 . Cpe02g00164 Bhi09g03359 Tan01g4825 Cmetu07g0443 . . . . Cla05g02010 Cam05g2163 Cec05g2179 Cco05g2227 Clacu05g2155 Cmu05g2023 Cre05g2150 . . Chy07g00111 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00225 Bda_Chr03 FPKM 20.664452 17.699469 21.773642 18.672993 14.166247 13.052314 13.753065 46.37516 53.079132