Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00231 ATGCATCTTTCACTATGGAAGCCTTTATCCCAGTGTGCCGCCTTAATTTCGGAGAAGAAAACCAGGAGGAGAGGGCGAGACAGTGGCTCCTCTGTGGCCGAAGACGCAAAGCGAAAGTCCTCAATCTTGAGGCAATTGCAGGAGAACAAGTTGAGAGAAGCTCTCGAAGAAGCTTCAGAAGAGGGGTCTCTCGCGAAATACAAAGACATTGATTCCGAATCACCGAATCAAGACGGAAACTTGGGTCGGTCAAGATCTCTCGCGAGGCTTCACGGTCAAAAAGAGTTTCTCCGCGCCACCGCGCTGGCTGCGGAGCATATATATTCCACCGAAAACTCCATACCCGATCTGCACGATGCCTTTTCTAGGTTTCTTACAATGTACCCTAAATTTCAGTCCTCGGAGAAGATCGACCATTTAAGATCGGACGAATACGAGCATCTCTCCGATTCATTTGCTAAGGTATGCCTTGATTATTGTGGTTTTGGACTGTTCTCTTATCTTCAAACCCAACAATTTTGGGAGTCGTCGGCGTTTACGCTCTCAGAAATTACTGCGAATTTGAGTAACCACGCCCTTTACGGCGGCGCTGATAAAGGCACGGCGGAAAACGATATTAAGAGTAGAATTATGGAGTATTTGAACATCCCGGAAAATGAATATGGTCTTGTTTTCACTGTAAGTAGAGGCTCTGCGTTTAAATTGCTGGCTGAATCTTACCCTTTTCAAACGAACAAGAAGCTTTTAACCATGTTTGACCATGAAAGCCAGTCTGTAAATTGGATGGCTCAGAGTGCAAAGGAGAAAGGAGGTAAGGTTTCTAGTGCTTGGTTCAAGTGGCCAACGCTGAGACTCTGTTCGAGGGAGTTAAGGAAACAGATTACAAACAGTAAAAGGAAGAAGAAGGATTCTGCCGTTGGGCTGTTTGTATTTCCTGTCCAGTCTAGGGTAACTGGAGCTAAGTATTCTTACCAGTGGATGGCTCTTGCCCAGCAGAACAATTGGCATGTTTTGCTTGATGCCGGATCATTGGGTCCTAAAGACATGGATTCCTTGGGGCTTTCCCTCTTTCGTCCCGATTTCATCGTCACTTCATTTTATCGGGTATTTGGATTCGACCCGACCGGATTTGGATGTCTTTTGATCAAGAAATCGGTGATGGGAAGTCTGCATATCAAATCCGGGAGAACTGGGTCTGGTATGGTGAGGATTCTCCCTGTTTTCCCTCAATACATAAAAAGTCCGATCTTTAGTGAGGATGAGTCATCGGAAAATTCATATTGGATCGATTTAGGTCATAGTCCTTTCGGGTCTGAAAAATCCAGCAAATCGACTAGACAAAAAAACGGATCGCCTTTGCCTCCATCGTGGTTTTCTGTAAGGAGAAACAACAAAAGAGCCTCCTTAAAATTGTCTTCAAGAATATCAAATAGTCCTCTACGGGATAATGGAAGGACAAATCTCAGCTTGAACGAAGATTCTGTGCTTTCTTTTGATGCAGCTATTTTATCAGTATCACAAGATATCGACTGCGTTAAGGGAATTCCCGAGGAAGAAGACAGAGACTTATCCTCTGGAAATATCCGAAACTTCACTGGGGAAATTCAAGAGGATTCAGATTTAACAGGAGCTCCAATGCCAGCAAACTCTACCTCAAATGGATTCCATAATCTCCAGAGTTCTTCAACCTCCACAATCTGCCAAGGAGGAGCGAAAGACAGTGCTATAAGGAGGGAGACCGAAGGAGAATTCAGGCTGTTGGGAGGTCGGGAAAGAAGCATTTTAAGTGGGCGTCGGTTTTTCAGCGTAGAAGGCGATAAAGCTTTGAGCATGGGTCGAAGGGTATCCTTTAGCACAGAAGATATCCAAACAGAAAATCTAAACCATACATTTGAGCCTGGGGAATCATTGATAACCGCTAATGGCGATGAGGAGTCCACGAGCGATGGAGAGTATAGCGATGAACAAGAATGGCGAAGAAGAGAGCCCGAGATCATATGCCAAAATCTTGATCATGTCAATGCATTAGGCCTCAACAAAACTTCCCTTCGTTTAAGGTATCTCATCAACTGGCTTGTTACCTCTTTACTGCATCTTAGATTCCCCAGCACCGGTGATGATGATAAAGGAACGCCTCTCGTTCAACTTTACGGTCCCCCAGTGGTTGTCGGCCGAGACCGCAAAAACGTCTTCTTCCGAGTAGAAGTCGTCACGGCTTCTCTTGGGTTTCTCACAAACTTTGAAGATGTTTATAAAATGTGGGCTTTCATAGCCAAGTTTCTCAATCCATCGTTTGGTTGCAGAATCGTTAGATGGTTCAGAAACTTAGAAATCTGA 2337 44.72 MHLSLWKPLSQCAALISEKKTRRRGRDSGSSVAEDAKRKSSILRQLQENKLREALEEASEEGSLAKYKDIDSESPNQDGNLGRSRSLARLHGQKEFLRATALAAEHIYSTENSIPDLHDAFSRFLTMYPKFQSSEKIDHLRSDEYEHLSDSFAKVCLDYCGFGLFSYLQTQQFWESSAFTLSEITANLSNHALYGGADKGTAENDIKSRIMEYLNIPENEYGLVFTVSRGSAFKLLAESYPFQTNKKLLTMFDHESQSVNWMAQSAKEKGGKVSSAWFKWPTLRLCSRELRKQITNSKRKKKDSAVGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIVTSFYRVFGFDPTGFGCLLIKKSVMGSLHIKSGRTGSGMVRILPVFPQYIKSPIFSEDESSENSYWIDLGHSPFGSEKSSKSTRQKNGSPLPPSWFSVRRNNKRASLKLSSRISNSPLRDNGRTNLSLNEDSVLSFDAAILSVSQDIDCVKGIPEEEDRDLSSGNIRNFTGEIQEDSDLTGAPMPANSTSNGFHNLQSSSTSTICQGGAKDSAIRRETEGEFRLLGGRERSILSGRRFFSVEGDKALSMGRRVSFSTEDIQTENLNHTFEPGESLITANGDEESTSDGEYSDEQEWRRREPEIICQNLDHVNALGLNKTSLRLRYLINWLVTSLLHLRFPSTGDDDKGTPLVQLYGPPVVVGRDRKNVFFRVEVVTASLGFLTNFEDVYKMWAFIAKFLNPSFGCRIVRWFRNLEI 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1790829 1793907 + Bda016174.2 Bda03g00231 3490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00231 778 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 724 765 - -
Bda03g00231 778 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 37 435 - -
Bda03g00231 778 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 641 721 - -
Bda03g00231 778 MobiDBLite consensus disorder prediction 538 570 - -
Bda03g00231 778 SUPERFAMILY PLP-dependent transferases 185 400 IPR015424 -
Bda03g00231 778 PANTHER OS03G0765800 PROTEIN 724 765 - -
Bda03g00231 778 PANTHER OS03G0765800 PROTEIN 37 435 - -
Bda03g00231 778 PANTHER OS03G0765800 PROTEIN 641 721 - -
Bda03g00231 778 MobiDBLite consensus disorder prediction 437 458 - -
Bda03g00231 778 Gene3D - 176 425 IPR015421 GO:0003824
Bda03g00231 778 MobiDBLite consensus disorder prediction 17 39 - -
Bda03g00231 778 MobiDBLite consensus disorder prediction 64 83 - -
Bda03g00231 778 MobiDBLite consensus disorder prediction 538 572 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00231 - - - cpap:110820031 863.603
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00558 Bda03g00231 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00231 Bda-Chr3:1790829 Bda10g00302 Bda-Chr10:32082840 2.44E-78 dispersed
Bda01g00558 Bda-Chr1:32561588 Bda03g00231 Bda-Chr3:1790829 2.87E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g837 . Blo12g00938 Bda01g00558 Bda03g00231 Bpe02g00415 Bpe04g00196 Bma04g00183 Bma01g02291 . . Cma01g01875 Cma09g00198 Car01g01461 . . Cpe06g00135 . . . . . . . . . . . . . . . Cone4ag1547 Cone7ag1404 . . Lsi04g01604 Csa03g04151 Chy04g00569 . . . . . . . . . . Cmo01g01933 Cmo09g00193 . . . Car09g00167 . Cpe02g00153 Bhi09g02024 . . . . Mch11g0244 . Cla05g01995 Cam05g2146 Cec05g2161 Cco05g2209 Clacu05g2137 Cmu05g2009 Cre05g2134 . . . Cme04g00680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005433 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00231 Bda_Chr03 FPKM 27.74733 28.92543 13.335136 15.147552 23.236204 31.598927 26.675817 11.61129 11.33289