Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00232 AATACGGCGGAGGAGACTCGCCGAGAGATGTGGCACGGGAGGCGGCCCTGTTTCTACACATTTTATTCTTCCACTTTGAGCTCAGAGCGTCTGAAAATTCCAGTAAAATTTGTCAGACACATGGAAGAGAAAGCATCCGGATTAGTTTCATTAATGGGGCCAAGTGGCCACATTTGGCATGTTGACTTGACTCAGCAGGACGATGACTTATTTTTCAATCATGGATGGCCAGCATTTGTTAGAGACCATTTTTTAGATTGTGGAGACTTTCTTGTTTTCAGATACAATGGCGAGTTACATTTCACTGTGCAACTTTTTGATCAAAGTGCATGTGAAAAGGAAGCTGCATTTCATTCTCAATGCAGTCAAGATCCCAGTGATGTTGGAAAATATGGGCTACTAAAAAGAATCAGGAAGGAAGCAGATTCATCTCCAGATACATTTACTGATGGCGTGATAAAGAAAATGAGGAGCTTTTCTGAACTCCAACTGGGTTTTGAAGAAAAAAATCAGGAACTTCGAGATGTTCAGATACACAACGGAGATATCCGGAATAGAGCCTGCAAAGAAGTAGACTTGGGAGATAATGTTTATATCTCGCTATCTGCTCAGGATGAAAAGAAAGTAGCCCAGTCTTTTTCTTCTAATTTTCCATATTTTGTGAGAATAATGAAAACCTTCAATACCAGTGGTTCTTTTACTCTGAATATTCCTTATCAATTCTCAATGGCTCATCTACCAAACTGCAAAATAAAGATTGTCCTTCACAATTTGAAAGGGGAAAGTTGGACAGTGAATTCTGTACCTTCTACGAGAGTGCATACTACACATACTCTATGTGGGGGATGGTTAGCCTTTGTCCGTGGTAATGACGTCAAGGTGGGAGATGTGTGCATTTTTGAACTTGTTCGTGAGTGTGAATTACTTGTGCATATTCTTGGAGCTGGGAAAGTATGGTCTGAGAGCCATAGTGGTATAGACCCTGATCATAGGGTAGGCGCAGGTTCTGCACTCGCTTCCCATAAAAATTTTAAAGGCAATCCTAAAAAAGCAATTTTAAAGTCATCCAAGGTCCAGTCTAAGAGCTCAAAAAAGGGTGAAAAACCCAGTAAAAATGGTCCGAGGTCACGTAAAAATATTTCCCTTTCAAGCAACATTCGGAAACGATGCAGTGATGCAAATTCTGTGTCAGTTTCCTCACATACAAAGTTCTCCAATGAAAATATAGGTAAGGATCTTTTATCCTTGTCAGTATCAAAGGGTGATATGCATGGTTTAAGAATGATGTTGGCAATGGATGAAGAAAGAGCATCTAAAGCATTCAATTCTTGTTTTCCTAGTTTTGTCAGAATAATGAAAAGGTTCAACATAAGTGGTTCATACACTTTGAAAGTTCCACACCAGTTTTCTACAGCCCATCTCCCTAATGCCAAAACTGAGATCATGCTTCATAACTCGAAAGGTGAATGTTGGACAGTGAACTCCGTCCCAGACTCAATGGGGCGAATGGTGCATACATTTTGTGGTGGTTGGATGGCCTTTGTTCGTGGCAACAATATCAATATTGGAGATATCTGCATTTTTGAACTCATTGACAGCTATGAAATGATTGTACATATATCTGGGTATGGCAAGAAAGAGCTTGGGTATGGCAGTGGAGAAGCAATCTGTAATCCACTAGATATTGTACCATTAAACGCTAATCACGCTCCTGTGTAA 1719 40.14 NTAEETRREMWHGRRPCFYTFYSSTLSSERLKIPVKFVRHMEEKASGLVSLMGPSGHIWHVDLTQQDDDLFFNHGWPAFVRDHFLDCGDFLVFRYNGELHFTVQLFDQSACEKEAAFHSQCSQDPSDVGKYGLLKRIRKEADSSPDTFTDGVIKKMRSFSELQLGFEEKNQELRDVQIHNGDIRNRACKEVDLGDNVYISLSAQDEKKVAQSFSSNFPYFVRIMKTFNTSGSFTLNIPYQFSMAHLPNCKIKIVLHNLKGESWTVNSVPSTRVHTTHTLCGGWLAFVRGNDVKVGDVCIFELVRECELLVHILGAGKVWSESHSGIDPDHRVGAGSALASHKNFKGNPKKAILKSSKVQSKSSKKGEKPSKNGPRSRKNISLSSNIRKRCSDANSVSVSSHTKFSNENIGKDLLSLSVSKGDMHGLRMMLAMDEERASKAFNSCFPSFVRIMKRFNISGSYTLKVPHQFSTAHLPNAKTEIMLHNSKGECWTVNSVPDSMGRMVHTFCGGWMAFVRGNNINIGDICIFELIDSYEMIVHISGYGKKELGYGSGEAICNPLDIVPLNANHAPV 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1794823 1798231 + Bda016175.2 Bda03g00232 3491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00232 572 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Bda03g00232 572 Gene3D - 10 111 IPR015300 -
Bda03g00232 572 Gene3D - 431 543 IPR015300 -
Bda03g00232 572 Gene3D - 202 315 IPR015300 -
Bda03g00232 572 MobiDBLite consensus disorder prediction 349 384 - -
Bda03g00232 572 SUPERFAMILY DNA-binding pseudobarrel domain 213 315 IPR015300 -
Bda03g00232 572 Pfam B3 DNA binding domain 452 539 IPR003340 GO:0003677
Bda03g00232 572 Pfam B3 DNA binding domain 23 108 IPR003340 GO:0003677
Bda03g00232 572 Pfam B3 DNA binding domain 220 313 IPR003340 GO:0003677
Bda03g00232 572 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 348 558 IPR044837 -
Bda03g00232 572 CDD B3_DNA 218 313 IPR003340 GO:0003677
Bda03g00232 572 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 348 558 - -
Bda03g00232 572 MobiDBLite consensus disorder prediction 360 374 - -
Bda03g00232 572 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 192 317 - -
Bda03g00232 572 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 6 170 - -
Bda03g00232 572 SUPERFAMILY DNA-binding pseudobarrel domain 441 542 IPR015300 -
Bda03g00232 572 SUPERFAMILY DNA-binding pseudobarrel domain 18 114 IPR015300 -
Bda03g00232 572 CDD B3_DNA 446 540 IPR003340 GO:0003677
Bda03g00232 572 ProSiteProfiles B3 DNA-binding domain profile. 220 316 IPR003340 GO:0003677
Bda03g00232 572 ProSiteProfiles B3 DNA-binding domain profile. 448 544 IPR003340 GO:0003677
Bda03g00232 572 SMART B3_2 448 544 IPR003340 GO:0003677
Bda03g00232 572 SMART B3_2 220 316 IPR003340 GO:0003677
Bda03g00232 572 SMART B3_2 17 109 IPR003340 GO:0003677
Bda03g00232 572 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 192 317 IPR044837 -
Bda03g00232 572 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 6 170 IPR044837 -
Bda03g00232 572 CDD B3_DNA 23 107 IPR003340 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00232 - - - zju:107420328 605.134
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00232 Bda-Chr3:1794823 Bda10g00218 Bda-Chr10:9864311 2.87E-15 dispersed
Bda03g00232 Bda-Chr3:1794823 Bda15g00024 Bda-Chr15:1644275 5.00E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g838 . Blo12g00937 . Bda03g00232 . Bpe04g00197 Bma04g00184 . . . Cma01g01876 Cma09g00197 Car01g01462 Car12g00479 . Cpe06g00134 Cpe07g00453 . . . . . . . . . . . . . . Cone4ag1546 Cone7ag1405 . . Lsi04g01605 Csa03g04152 Chy04g00568 . . . . . . . . . . Cmo01g01934 Cmo09g00192 Cma12g00508 . . Car09g00166 . Cpe02g00152 Bhi09g02026 . . . . . . Cla05g01994 Cam05g2144 Cec05g2160 Cco05g2207 Clacu05g2135 Cmu05g2008 Cre05g2133 . Csa02g02009 . Cme04g00679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006500 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 0 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15624 PF02362 B3 1.10E-10 CL0405 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00232 Bda_Chr03 FPKM 16.817835 17.52467 15.941588 17.355761 18.229864 17.622736 19.008369 12.978449 11.807397