Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00233 ATGGAGCTTTCTTTAAGAGAGCTTCACAGAAACTGGGCCAAGGAGAAAAGCTCTTCCGGCGAGGTGTTAGTGAATTTGGACCAGTGGTTCGGGGATTTAGTTATGAACGTCGTTCTGAAAGTCCTCGCCGGAAAACGATACTTCGGAAAAATGGCGGACGGTTGTGAAGAAGAGTCAAGAAAATTCCAGAAAGTACTGAGGGATTTCTTCTGTCTCGCAGGTAGATTTGTGGTAGCAGATGTCATTCCTTATCTTGGGTGGTTTGATTTTGGTGGATATGAAAAGGCCATGAAGAAGACAGCCAAAGAAATAGACGACGTGGTATCGACATGGCTGGAAGAGCACAAGAATAAGATAGTTTACGGCAAGGCTGAAGAAAACGAGAGGGATTACATTTACGCGATGATAGCTGCACTAAACAACAAAGATTTTGCCGGTTTCAACGCCGACACTCTCATCAAAGCAAATACCTTGAGTTTATTGGCGGCAGCAAGTGAATCAAGCACGGTGACTCTCACATGGACGATATCTCTACTTCTGAACAATCCAGAGGCTTTCATGAAAGTAAAAGAAGAAATCGACGATCTGGTAGGAAAAGAGAGAACAGTGAGAGAATCAGATATTGAAAAGCTGGTTTATCTTCAAGCCGCAGTCAAAGAAACTCTCCGTCTATACCCACCGGGACCTCTTTTGACTCCGCGAATGTTCACCGACGACTGTACCGTCGGCGGCTACCACGTCCGGAAAGGCACTCGACTGCTGCCGAACGTTTGGAAGATTCAGACGGACCCGAAAGTGTGGACCGACCCGTTGAAGTTCAAACCCGAAAGATTTCTCGAGGCGCAGAAACATATCGACGTCAGAGGGATGAATTACGAACTGATTCCGTTCGGGAGTGGACGACGAATCTGTCCCGGAATATCGTTTGGACTTCAAACAGTGCACTTCACTCTGGCCAGGTTTCTTCAAGCTTTCGAGGTCAAAAATATTTCCGACCAACCAGTAGACATGACGGAGAAGTTCGGAATATCAAACGGGAAACAGCTTCCGCTTCAAGTTCTCATCAAACCACGGCTGTCGCTTGTTTCTGAAGTAGACGTTCTTGATTCAAATAATGGCGTTTAG 1125 46.13 MELSLRELHRNWAKEKSSSGEVLVNLDQWFGDLVMNVVLKVLAGKRYFGKMADGCEEESRKFQKVLRDFFCLAGRFVVADVIPYLGWFDFGGYEKAMKKTAKEIDDVVSTWLEEHKNKIVYGKAEENERDYIYAMIAALNNKDFAGFNADTLIKANTLSLLAAASESSTVTLTWTISLLLNNPEAFMKVKEEIDDLVGKERTVRESDIEKLVYLQAAVKETLRLYPPGPLLTPRMFTDDCTVGGYHVRKGTRLLPNVWKIQTDPKVWTDPLKFKPERFLEAQKHIDVRGMNYELIPFGSGRRICPGISFGLQTVHFTLARFLQAFEVKNISDQPVDMTEKFGISNGKQLPLQVLIKPRLSLVSEVDVLDSNNGV 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1807250 1808458 - Bda016176.1 Bda03g00233 3492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00233 374 PRINTS E-class P450 group I signature 256 280 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 PRINTS E-class P450 group I signature 294 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 PRINTS E-class P450 group I signature 33 51 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 PRINTS E-class P450 group I signature 152 169 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 PRINTS E-class P450 group I signature 172 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 PRINTS E-class P450 group I signature 215 233 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 PRINTS E-class P450 group I signature 304 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 PANTHER CYTOCHROME P450 82A2 3 361 - -
Bda03g00233 374 PANTHER CYTOCHROME P450 82C3-RELATED 3 361 - -
Bda03g00233 374 Gene3D Cytochrome P450 1 359 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 PRINTS P450 superfamily signature 163 180 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 PRINTS P450 superfamily signature 216 227 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 PRINTS P450 superfamily signature 295 304 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 Pfam Cytochrome P450 4 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 SUPERFAMILY Cytochrome P450 5 358 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00233 374 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 297 306 IPR017972 GO:0005506|GO:0016705
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00233 - - - twl:120000203 429.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00233 Bda-Chr3:1807250 Bda03g00238 Bda-Chr3:1847152 0 dispersed
Bda03g00233 Bda-Chr3:1807250 Bda03g00235 Bda-Chr3:1820025 1.14E-134 proximal
Bda01g00555 Bda-Chr1:32480229 Bda03g00233 Bda-Chr3:1807250 7.08E-145 wgd
Bda01g00455 Bda-Chr1:31604956 Bda03g00233 Bda-Chr3:1807250 7.32E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g843 . . . Bda03g00233 . Bpe04g00198 Bma04g00186 . . . . Cma09g00192 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01609 Csa03g04156 Chy04g00560 . . . . . . . . . . Cmo01g01938 Cmo09g00188 . . . . . . Bhi09g02030 . . . . . . Cla05g01988 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00233 Bda_Chr03 FPKM 13.402439 16.042107 10.888391 9.696795 11.715552 10.202593 16.359808 13.513084 10.204789