Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00236 ATGGCTGACAAGTTCGGACCGGTGTTTCGGATCCGGCTCGGTCTGCGACCAGCCTTGGTGGTTAGTAGTTGGGAAGTGGCCAAGGAGTGCTTTACCACGAACGACTTTGCTGTGTCTTCTCGCCCACAACTCTTAGCTGCGAAGCACTTATGCTATAACTTCGCCATGCCGGGTTTTGCAAGCTACGGTCCTTACTGGCGGGAGATTCGAAAATTTACAATCTTGGAGCTTCTCTCGAACCGACGGCTCGAACTACTCAAGCCTGTAAGAGCTAACGAGATCGACACCGCTTTGAGAAGCTTATACAGAGTATGGGAAGATAAAAGTAATGGTTCGGGTAGGATTTTGGTGGATTTGAGTAAATGGTTCAAGAAATTGAATATGAACATGATTCTGACGACTATTGTGGGGAAACACTACAGTTATGATGCAGAAGAGGGAGAGGAAGAAAAAGAGATTCGATTTCAGGAAGCTCTGACAGAATTCTTCTATTTGCTCGGCCAATTCGTGGTCGGCGATGCTATTCCCTTTCTGCGTTGGTTTGATTTCGGAGGACACGAGAAGTCTATGAAGAAAGCTGCGAAAGATTTGAACTCGGTTCTCGAATCGTGGCTGGAAGAACACAAGAGAAACAAAAATTCAGATAAATCCAGCGAGAAACAAGATTTCATGGACGTATTGATCTCTGCTGTTGACGATATGGACACCCGCCCGCATGACGCTGATACCGTCACGAAAGCAACAGTATTGGGTATGATTGTTGGAGGAACCGAAATGTTGGCTATCACGCTGACCTGGGTAATATCACTGCTACTGAATCATCCGACCAAGTTGAGAATGGCAGTTGAAGAACTCGACGCAATGGTAGGAAGGGAGAGAGTAGTGAACGAAACAGATATTTCAGAGCTGGTCTACTTGCAGGCAATAGTGCGAGAGACTCTGCGTTTATACCCACCAGCGCCGCTGCTTGCGCCGCGAGAGTTCACCGAAGACTGCAAGATCGGAGGCTTTCACGTTGCGAAGGGAACTCGTTTGATCACAAACGTGTATAAGATCCAGACAGACCCGAGGGTGTGGAGCGACGACCCATTTGAGTTCAAGCCGGAGAGATTTCTGGCCACCCACAGAAAAGTGGACGTGCGGGGTAAGAACTATGAGTTGATCCCTTTCGGAAGCGGGAGAAGAGCCTGTCCCGGTATATCCTTCTCCCTCCAGACGCTCCTACCAACTTTGGCCAGACTTTTGCAGTTTTTCGATCTGGAAAATGCATCTGATGAGGATGTGGATATGCGTAGAATCTTTGGTCTAAATTACTCAAAAGCTACTCCTCTCAATGTTTATATCAAACCCCGCTTGTCGTCTAAACTTGTCTAA 1374 47.45 MADKFGPVFRIRLGLRPALVVSSWEVAKECFTTNDFAVSSRPQLLAAKHLCYNFAMPGFASYGPYWREIRKFTILELLSNRRLELLKPVRANEIDTALRSLYRVWEDKSNGSGRILVDLSKWFKKLNMNMILTTIVGKHYSYDAEEGEEEKEIRFQEALTEFFYLLGQFVVGDAIPFLRWFDFGGHEKSMKKAAKDLNSVLESWLEEHKRNKNSDKSSEKQDFMDVLISAVDDMDTRPHDADTVTKATVLGMIVGGTEMLAITLTWVISLLLNHPTKLRMAVEELDAMVGRERVVNETDISELVYLQAIVRETLRLYPPAPLLAPREFTEDCKIGGFHVAKGTRLITNVYKIQTDPRVWSDDPFEFKPERFLATHRKVDVRGKNYELIPFGSGRRACPGISFSLQTLLPTLARLLQFFDLENASDEDVDMRRIFGLNYSKATPLNVYIKPRLSSKLV 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1825868 1827413 - Bda016179.1 Bda03g00236 3495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00236 457 PRINTS P450 superfamily signature 388 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PRINTS P450 superfamily signature 255 272 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PRINTS P450 superfamily signature 308 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PANTHER CYTOCHROME P450 82A2 1 455 - -
Bda03g00236 457 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 390 399 IPR017972 GO:0005506|GO:0016705
Bda03g00236 457 Pfam Cytochrome P450 2 431 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PRINTS E-class P450 group I signature 264 290 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PRINTS E-class P450 group I signature 349 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PRINTS E-class P450 group I signature 397 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PRINTS E-class P450 group I signature 126 144 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PRINTS E-class P450 group I signature 2 21 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PRINTS E-class P450 group I signature 387 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PRINTS E-class P450 group I signature 244 261 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PRINTS E-class P450 group I signature 307 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PRINTS E-class P450 group I signature 26 47 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 SUPERFAMILY Cytochrome P450 1 451 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 Gene3D Cytochrome P450 1 451 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Bda03g00236 457 PANTHER CYTOCHROME P450 82C3-RELATED 1 455 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00236 - - - qsu:112023929 555.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00236 Bda-Chr3:1825868 Bda03g00238 Bda-Chr3:1847152 0 dispersed
Bda03g00235 Bda-Chr3:1820025 Bda03g00236 Bda-Chr3:1825868 1.37E-170 tandem
Bda03g00236 Bda-Chr3:1825868 Bda03g00237 Bda-Chr3:1834645 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g850 . Blo12g00927 . Bda03g00236 . . Bma04g00188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01616 Csa03g04161 Chy04g00555 . . . . . . . . . . . Cmo09g00183 . . . . . . Bhi09g02035 . . . . . . Cla05g01983 . . . . . . . . . Cme04g00662
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000018 15 22 15 12 7 19 2 17 20 14 15 18 14 11 26 20 19 10 1 20 12 9 8 16 8 19 17 19 17 20 442
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00236 Bda_Chr03 FPKM 8.435511 8.470791 9.705415 11.362538 6.685881 5.496743 5.624346 5.14516 5.168963