Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00243 ATGAGAGACGAAGGAGAAGATGAGCGGATGTTCGGGCCGGCAAACAGCATTCCGCGCCCCAAATTCGTCAACGTTTTGCATTCTGATCCCAACATTTCGTCGACAGCCATGGATGAAGATTTCATGATGAGAAAGAGCAGCGCTTCAGCCAGCGCTTACGGTTTTTACGATTCGACCCAAATGACCGGCGATTGCTCTCCCATGACCATGTCCCCGTGGAACCAAACGTCCATGTTTGCACAATCTTCGTGGTCGCAGTTCGAAGAAAGCTTGCCCCAGAATCGTATTATAGGCTCTCTGTTACGGGAAGAAGGTCATATTTACTCGCTAGCCGCCTCCGGCGAGCTCTTATACACCGGCTCCGACAGCAAGAATATTCGAGTATGGAAGGACCTGAAAGAATTCACCGGGTTTAAATCAAACAGTGGCTTGGTTAAGGCAATTATAATCTCCGGCGAAAAAATCTTCACCGGCCACCAAGACGGCAAGGTTCGAGTTTGGACTGTTTCCCCGAAAAATCCTGTTATTCATAAACGCACTGGCACTTTACCCACTCTGAAAGACATTTTCAAGAGCTCCATTAATCCGAATAATTATGTGGAAGGTCGACGTCACAGACGAGTTTTGTGGATAAAACATTCCGACGCCGTCTCTGGCCTGACCTTGAGCGAAGATAAGGTGTTTTTATACTCTGCTTCGTGGGATAGAACTCTGAAAGTTTGGAGAGTATCGGACTCCAAATGCCTCGAGTCTCTCAAAGTCCACGACGACGCCGTTAATTCAGTGGTGACAGCCGGCGACGGGCTGGTCTTCACCGGTTCAGCGGACGGTACGGTGAAGGTGTGGAGGAGAGAGCAGAAAGGGAAAGCGACGAAACACACTTTGGTTCAAACTCTATTGAAACAAGACTGCGCCGTCACGGCGCTGGCGGTTAACACCTCCGGTCCGGTGGTTTACAGTGCGTCGTCCGACGGCGTGGTCAACTTTTGGGAGTTAAATAATCAACTTTCTCATGGTGGGGTCCTTAAGGGACACAAGGTTGCGGTTCTCTGCCTAGAGTCTGCAGGGAGTCTACTATACAGCGGCTCTGCTGATAATACGATTTGTGTATGGAAGAGGGATGGTGTGATCCACACGTGCCTGTCTGTATTGACTGGTCATACTGGGCCGGTCAAGTGTCTGGCGGTGGAGGAGGATCCGGAGTCGTTCAAAGACGGTGATCGACGGTGGATATTGTATAGTGGAAGCCTGGATAAGTCAGTGAAGGTGTGGAGTGTGTCTGAAATGAGCCCTGATTCTAATCGTGTGGCTATGATGCAACAGCCCTACATGATTTCCGATGCAGACTCGCTACCGTCCGACGGAAGCGTCTCTTCCGCCGGCAGAGGTAGCCAAAACAAGACCCACTAA 1410 50.35 MRDEGEDERMFGPANSIPRPKFVNVLHSDPNISSTAMDEDFMMRKSSASASAYGFYDSTQMTGDCSPMTMSPWNQTSMFAQSSWSQFEESLPQNRIIGSLLREEGHIYSLAASGELLYTGSDSKNIRVWKDLKEFTGFKSNSGLVKAIIISGEKIFTGHQDGKVRVWTVSPKNPVIHKRTGTLPTLKDIFKSSINPNNYVEGRRHRRVLWIKHSDAVSGLTLSEDKVFLYSASWDRTLKVWRVSDSKCLESLKVHDDAVNSVVTAGDGLVFTGSADGTVKVWRREQKGKATKHTLVQTLLKQDCAVTALAVNTSGPVVYSASSDGVVNFWELNNQLSHGGVLKGHKVAVLCLESAGSLLYSGSADNTICVWKRDGVIHTCLSVLTGHTGPVKCLAVEEDPESFKDGDRRWILYSGSLDKSVKVWSVSEMSPDSNRVAMMQQPYMISDADSLPSDGSVSSAGRGSQNKTH 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1935770 1937179 - Bda016186.1 Bda03g00243 3502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00243 469 Gene3D - 73 200 IPR015943 GO:0005515
Bda03g00243 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 251 IPR001680 GO:0005515
Bda03g00243 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 334 IPR001680 GO:0005515
Bda03g00243 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 282 IPR001680 GO:0005515
Bda03g00243 469 SUPERFAMILY WD40 repeat-like 100 431 IPR036322 GO:0005515
Bda03g00243 469 Pfam WD domain, G-beta repeat 304 330 IPR001680 GO:0005515
Bda03g00243 469 Pfam WD domain, G-beta repeat 213 241 IPR001680 GO:0005515
Bda03g00243 469 Pfam WD domain, G-beta repeat 247 282 IPR001680 GO:0005515
Bda03g00243 469 Pfam WD domain, G-beta repeat 379 425 IPR001680 GO:0005515
Bda03g00243 469 Pfam WD domain, G-beta repeat 340 372 IPR001680 GO:0005515
Bda03g00243 469 Pfam WD domain, G-beta repeat 104 130 IPR001680 GO:0005515
Bda03g00243 469 ProSitePatterns Trp-Asp (WD) repeats signature. 318 332 IPR019775 -
Bda03g00243 469 SMART WD40_4 292 331 IPR001680 GO:0005515
Bda03g00243 469 SMART WD40_4 204 242 IPR001680 GO:0005515
Bda03g00243 469 SMART WD40_4 93 130 IPR001680 GO:0005515
Bda03g00243 469 SMART WD40_4 335 372 IPR001680 GO:0005515
Bda03g00243 469 SMART WD40_4 377 425 IPR001680 GO:0005515
Bda03g00243 469 SMART WD40_4 131 168 IPR001680 GO:0005515
Bda03g00243 469 SMART WD40_4 245 283 IPR001680 GO:0005515
Bda03g00243 469 MobiDBLite consensus disorder prediction 447 469 - -
Bda03g00243 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 282 - -
Bda03g00243 469 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 16 449 IPR045182 -
Bda03g00243 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 342 372 IPR001680 GO:0005515
Bda03g00243 469 MobiDBLite consensus disorder prediction 451 469 - -
Bda03g00243 469 Gene3D - 293 467 IPR015943 GO:0005515
Bda03g00243 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 434 IPR001680 GO:0005515
Bda03g00243 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 210 247 - -
Bda03g00243 469 Gene3D - 201 292 IPR015943 GO:0005515
Bda03g00243 469 CDD WD40 104 425 - -
Bda03g00243 469 PRINTS G protein beta WD-40 repeat signature 229 243 IPR020472 -
Bda03g00243 469 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Bda03g00243 469 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Bda03g00243 469 PANTHER PROTEIN JINGUBANG 16 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00243 - - - csv:101212251 700.279
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g00243 Bda08g01311 CCT
Bda03g00243 Bda08g01311 ECH
Bda01g00554 Bda03g00243 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00243 Bda-Chr3:1935770 Bda08g01318 Bda-Chr8:53022834 0 dispersed
Bda10g00980 Bda-Chr10:44057209 Bda03g00243 Bda-Chr3:1935770 5.61E-77 dispersed
Bda11g01675 Bda-Chr11:50905155 Bda03g00243 Bda-Chr3:1935770 2.49E-11 dispersed
Bda09g01302 Bda-Chr9:44868057 Bda03g00243 Bda-Chr3:1935770 4.52E-08 transposed
Bda01g00554 Bda-Chr1:32472959 Bda03g00243 Bda-Chr3:1935770 0 wgd
Bda01g00454 Bda-Chr1:31592255 Bda03g00243 Bda-Chr3:1935770 0 wgd
Bda14g00539 Bda-Chr14:3880472 Bda03g00243 Bda-Chr3:1935770 2.39E-11 wgd
Bda03g00243 Bda-Chr3:1935770 Bda08g01311 Bda-Chr8:52901453 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012788 3 1 2 2 1 1 0 1 1 1 1 1 1 0 1 2 1 0 0 1 1 1 1 0 0 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00243 Bda_Chr03 FPKM 20.896175 20.434828 16.676113 18.040071 32.413132 25.411491 35.525208 37.193256 43.586624