Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00248 ATGGAGATGGAGGTTGATACGATTAGTGGCTTGCCAGGGCATATTGTGGATCAAATTCTCTCTAAACTGCCGATTAGAGATGCTGTTAGAACGAGTATATTATCGAGCAGATGGAAGTTCAAATGGTCGACCATTCCTCGTCTAATATTTGACAGTCGGTGCGTGTCTATCTCTTCTCACGATCAAGATCAAACGCCGCATAATGTACTTGTGAGGATCGTCGATCACGTTCTCTTACTCCACCATGCCCCAGTTCTTCATTTCAAACTCTCTCACAAAGATCTTTTTGGTATTAGCGACATTGACAAGTGGATTCGTCATCTTTCAAGAAATGCTATCAGGGAATTGGTTCTTGAAATTTGGAAGGGTAATAGATATCTGATTCCGTCCTCCTTATTTGATTGCCAGTTTTTGGAGAACTTGGAGTTGTATAACTGTCTTATAAAACCTCCGTTATTGCGTAAGAATCTCAGGAGTTTGAAGAGGCTTAATCTTCAACAGGTGACTTTAGCCCAAGATGATTTTGAAAAATTGATTGCTAGCTGCCCTTTGCTTGAGAGGTTGACATTGATGAGTTTTGACGGTTTCACTCATCTCAATATAGATTCGCCAAGTCTTCATTTTTTATGTGTTGGGGGTATTTTTCACGACATCAATATCAAGAATGCTTTGAATTTGGTTGAAGTTTCTATGGGTTTGTATGCAAATATTGAGCATGACTTGAACCGGGCTTATGGTAAATCTGGCAATTTGTGGAAATTTTTATCTACTCTTCCCCGTGTTCAAAAATTGGAGGTTCATGGACATTTTTTGAAGCATTTGGCTTTTGGGATGATTCACTCGAAGCTGCCTAATCTTAGTGTTGATCTGAATTATCTTTCTCTGCACATAAACTTCAATAACTTGGATGAGATTTTAACTTCTTTGTGCATCTTAAGAAGCTCTCCAAATCTACAAGTTCTGCAAGTACTGGCTAGTCCAAATGAACTGGCAGTCATGCCGTCAGGTTCTAATTTGCGAGATGAAGATCATTGCCGGGATCTAAGTTCTCAATTCAGTTACTTACGACTAGTGAAAGTTTTTGGCATCTCTGGTCTAAGATCAGAAATGAGTTTCATCAGTTTTCTGCTTTTAGCATCCCCTGCACTTGAGAAGATGACTATTGAGCCTTCTTATTTTGCCTCTAAAGGATTGGACTTGATTAAAGAATTGCTCAGATGCAGACGGACCTCTGTTAAAGCAGAGATCATTTACTTAGATCAATAG 1266 39.18 MEMEVDTISGLPGHIVDQILSKLPIRDAVRTSILSSRWKFKWSTIPRLIFDSRCVSISSHDQDQTPHNVLVRIVDHVLLLHHAPVLHFKLSHKDLFGISDIDKWIRHLSRNAIRELVLEIWKGNRYLIPSSLFDCQFLENLELYNCLIKPPLLRKNLRSLKRLNLQQVTLAQDDFEKLIASCPLLERLTLMSFDGFTHLNIDSPSLHFLCVGGIFHDINIKNALNLVEVSMGLYANIEHDLNRAYGKSGNLWKFLSTLPRVQKLEVHGHFLKHLAFGMIHSKLPNLSVDLNYLSLHINFNNLDEILTSLCILRSSPNLQVLQVLASPNELAVMPSGSNLRDEDHCRDLSSQFSYLRLVKVFGISGLRSEMSFISFLLLASPALEKMTIEPSYFASKGLDLIKELLRCRRTSVKAEIIYLDQ 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2242570 2244170 - Bda016204.1 Bda03g00248 3507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00248 421 Pfam Leucine Rich Repeat 159 183 IPR013101 -
Bda03g00248 421 Gene3D Ribonuclease Inhibitor 4 300 IPR032675 -
Bda03g00248 421 SUPERFAMILY RNI-like 105 323 - -
Bda03g00248 421 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 2 386 - -
Bda03g00248 421 PANTHER F-BOX PROTEIN-LIKE 2 386 - -
Bda03g00248 421 Pfam F-box domain 8 40 IPR001810 GO:0005515
Bda03g00248 421 ProSiteProfiles F-box domain profile. 5 39 IPR001810 GO:0005515
Bda03g00248 421 SUPERFAMILY F-box domain 4 52 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00248 - - - pvy:116110603 457.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00248 Bda-Chr3:2242570 Bda07g01512 Bda-Chr7:28110936 2.46E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g874 . Blo12g00916 . Bda03g00248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019326 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00248 Bda_Chr03 FPKM 18.112837 21.341158 0.901127 1.371916 59.646782 80.024948 60.750607 0.0 0.0