Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00250 ATGTTTAATGGGTTTGGAGAGTCAACAAGCGAGCAGCCACTAAGCCCTTCTTTTTCTAATAACAACAGCAACAACAACAACGATGCTAGCAATTTTGAATGCAATATTTGCTTTGACTTGGCTCAAGATCCCATTGTAACACTATGCGGCCATCTTTTCTGCTGGTCATGCCTTTACAAATGGCTCCATATTCACTCGCATTCCCACGAATGCCCAGTTTGCAAGGCCCTCCTAGAAGAGGAGAAGTTGGTTCCATTATATGGTAGAGGAAAGACATCTACTGACCCGAGAGCAAAATCGATTCCGGGAATTAATATTCCGAATCGCCCTGCTGGACAAAGACCTGAAACAGCTCCTCCACCAGAAAGAACTCTCTTTCCTCCTCATGAGTTTGTATCCATGGGAGGAGGATTCTCATTTTCAGCAGCGTTTGGTGGTCTTGTCCCACCTTTGTTCAACCTTGATTTGCATGGCTTCCTTTATCCTGCGGTAAGCCGAGGCTTCCTGGCCGACAAGAAACTGGAATTGGAATCTTCTTCTATCTGA 546 45.24 MFNGFGESTSEQPLSPSFSNNNSNNNNDASNFECNICFDLAQDPIVTLCGHLFCWSCLYKWLHIHSHSHECPVCKALLEEEKLVPLYGRGKTSTDPRAKSIPGINIPNRPAGQRPETAPPPERTLFPPHEFVSMGGGFSFSAAFGGLVPPLFNLDLHGFLYPAVSRGFLADKKLELESSSI 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2251464 2252339 - Bda016206.1 Bda03g00250 3509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00250 181 PANTHER OS12G0636000 PROTEIN 4 160 - -
Bda03g00250 181 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Bda03g00250 181 SUPERFAMILY RING/U-box 30 87 - -
Bda03g00250 181 CDD RING-HC_AtRMA_like 32 76 - -
Bda03g00250 181 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Bda03g00250 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 89 IPR013083 -
Bda03g00250 181 MobiDBLite consensus disorder prediction 93 120 - -
Bda03g00250 181 MobiDBLite consensus disorder prediction 1 22 - -
Bda03g00250 181 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Bda03g00250 181 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 4 160 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bda03g00250 181 SMART ring_2 34 74 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00250 Bda-Chr3:2251464 Bda10g00312 Bda-Chr10:32609875 3.74E-71 dispersed
Bda05g00477 Bda-Chr5:51427534 Bda03g00250 Bda-Chr3:2251464 2.17E-21 dispersed
Bda01g00547 Bda-Chr1:32387548 Bda03g00250 Bda-Chr3:2251464 2.30E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00250 K10666 - csin:114299034 246.899