Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00250 | ATGTTTAATGGGTTTGGAGAGTCAACAAGCGAGCAGCCACTAAGCCCTTCTTTTTCTAATAACAACAGCAACAACAACAACGATGCTAGCAATTTTGAATGCAATATTTGCTTTGACTTGGCTCAAGATCCCATTGTAACACTATGCGGCCATCTTTTCTGCTGGTCATGCCTTTACAAATGGCTCCATATTCACTCGCATTCCCACGAATGCCCAGTTTGCAAGGCCCTCCTAGAAGAGGAGAAGTTGGTTCCATTATATGGTAGAGGAAAGACATCTACTGACCCGAGAGCAAAATCGATTCCGGGAATTAATATTCCGAATCGCCCTGCTGGACAAAGACCTGAAACAGCTCCTCCACCAGAAAGAACTCTCTTTCCTCCTCATGAGTTTGTATCCATGGGAGGAGGATTCTCATTTTCAGCAGCGTTTGGTGGTCTTGTCCCACCTTTGTTCAACCTTGATTTGCATGGCTTCCTTTATCCTGCGGTAAGCCGAGGCTTCCTGGCCGACAAGAAACTGGAATTGGAATCTTCTTCTATCTGA | 546 | 45.24 | MFNGFGESTSEQPLSPSFSNNNSNNNNDASNFECNICFDLAQDPIVTLCGHLFCWSCLYKWLHIHSHSHECPVCKALLEEEKLVPLYGRGKTSTDPRAKSIPGINIPNRPAGQRPETAPPPERTLFPPHEFVSMGGGFSFSAAFGGLVPPLFNLDLHGFLYPAVSRGFLADKKLELESSSI | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2251464 | 2252339 | - | Bda016206.1 | Bda03g00250 | 3509 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00250 | 181 | PANTHER | OS12G0636000 PROTEIN | 4 | 160 | - | - | |
Bda03g00250 | 181 | Pfam | Zinc finger, C3HC4 type (RING finger) | 33 | 74 | - | - | |
Bda03g00250 | 181 | SUPERFAMILY | RING/U-box | 30 | 87 | - | - | |
Bda03g00250 | 181 | CDD | RING-HC_AtRMA_like | 32 | 76 | - | - | |
Bda03g00250 | 181 | ProSiteProfiles | Zinc finger RING-type profile. | 34 | 75 | IPR001841 | - | |
Bda03g00250 | 181 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 89 | IPR013083 | - | |
Bda03g00250 | 181 | MobiDBLite | consensus disorder prediction | 93 | 120 | - | - | |
Bda03g00250 | 181 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Bda03g00250 | 181 | ProSitePatterns | Zinc finger RING-type signature. | 49 | 58 | IPR017907 | - | |
Bda03g00250 | 181 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 4 | 160 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Bda03g00250 | 181 | SMART | ring_2 | 34 | 74 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g00250 | Bda-Chr3:2251464 | Bda10g00312 | Bda-Chr10:32609875 | 3.74E-71 | dispersed | |
Bda05g00477 | Bda-Chr5:51427534 | Bda03g00250 | Bda-Chr3:2251464 | 2.17E-21 | dispersed | |
Bda01g00547 | Bda-Chr1:32387548 | Bda03g00250 | Bda-Chr3:2251464 | 2.30E-79 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00250 | K10666 | - | csin:114299034 | 246.899 |