Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00256 ATGGCGGAAGTAGAGAATTCTTCGTCGATTGCACTTTCTACGGCTTCTGCAGAAGCTGGAGTCTCTTCTTCAGGGTTTCAAATGGAGCCAGTATCAGAGATACCAACGAAGAAGAAGCGAAACCTCCCCGGAATGCCAGATCCGGATGCGGAGGTGATTGCTTTGTCTCCAAAAACACTGATGGCGACCAATCGGTTCGTGTGCGAGATCTGCAACAAAGGATTTCAGCGGGACCAGAATCTGCAGCTTCATCGGAGAGGCCACAACTTGCCGTGGAAGCTCCGGCAACGGACGAGCAAAGAGGTGCGGAAAAGAGTCTACGTCTGCCCGGAGGCTTCATGCGTTCACCACGACCCGGCGAGAGCTCTAGGCGATCTCACTGGAATAAAGAAGCATTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGCGATGCTCGAAGAAATACGCCGTACAGTCCGATTGGAAGGCGCACATGAAAACTTGCGGAACGCGAGAGTACAAATGCGATTGTGGCACTCTATTTTCTAGGAGGGACAGCTTCATCACCCACAGAGCTTTCTGCGATGCTTTAGCGGAGGAATGTTCTCGAGCCCATCAAACCCTAGCAATCTCCAACGTAGAAGGAAAAGGAAATGATTCTTCTGTAAAAATGATTGTGGCTTCACCGCCTCCACCGCCGCTTACGCCGTCCAACACTGTTGTTTCTCCAGCTTTGTCCATTCAAAGTTCGGAGTTGCCAGAGAACCCAATCGGAGTGTCGCCGTCGGCTCTGAACTCGACCGCCATTAATAATCCTATTCCAAGCAACAACTGCAGTAGTGTATTTGCTAGTGTATTTGCATCTACTTCCACAGCTTCAATCTCTCAACAAACAGGGACTTCCCCTCCTCCTTCATTCTCCACTCTAGTCTCCACCTTTACCAGCTCCGATATTACTCATAATCTCCCTGCAATGTCCGCCGTTGAACCAACCTCACTTTCTCTTGCCTCCTCTCTCTATCTCCCGACTCAGAGTTTCTCTCTCTATGCTTCTTCCGAACTAGACCACCGCCATTTCACCCCGACTCTTCAGCCGCCTGTCATGTCTGCAACAGCGTTGCTTCAAAAGGCAGCGCAAATGGGCGCTGCCGCATCTAGCGCTTCGTTGCTTCGCAGGTTTGGGTTAGCCATGTCTTCTCCCTCAGCTCAAGAAACCATTTCTAATCACCATTGGAGTGGTAACACAAAGCTTGAGAGCAGCAGAGCCTTTTTAACCGCTGGGTTAGGGCTAGGAATTCCATCTCCAGCTTCTAGTTTAAACGATGCAATGATGGTTTCGTCGTCTCCGTTTGGAAATCAGTTAATGACACGTGATCTTCTAGGACTTGGCATCGGAGAAACTGCGGCTTCCACCACTGGACTCTCTGCGTTGCTCACTTCATTCGGCAATGGCTTTGAAGTTGCCGCCTCTGCAACTTATGGAGGAGGAGGAAGCGCTGGTGGAGCTGAGTCTGGAATCAACATGGACAATGGTTGTACAGCAGACAGAAAGCCAAGAGGACCCACTTCGCTCTAA 1563 50.48 MAEVENSSSIALSTASAEAGVSSSGFQMEPVSEIPTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEASCVHHDPARALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEECSRAHQTLAISNVEGKGNDSSVKMIVASPPPPPLTPSNTVVSPALSIQSSELPENPIGVSPSALNSTAINNPIPSNNCSSVFASVFASTSTASISQQTGTSPPPSFSTLVSTFTSSDITHNLPAMSAVEPTSLSLASSLYLPTQSFSLYASSELDHRHFTPTLQPPVMSATALLQKAAQMGAAASSASLLRRFGLAMSSPSAQETISNHHWSGNTKLESSRAFLTAGLGLGIPSPASSLNDAMMVSSSPFGNQLMTRDLLGLGIGETAASTTGLSALLTSFGNGFEVAASATYGGGGSAGGAESGINMDNGCTADRKPRGPTSL 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2288639 2290763 - Bda016212.1 Bda03g00256 3515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00256 520 Gene3D Classic Zinc Finger 121 200 - -
Bda03g00256 520 SMART c2h2final6 107 137 IPR013087 -
Bda03g00256 520 SMART c2h2final6 66 88 IPR013087 -
Bda03g00256 520 SMART c2h2final6 142 162 IPR013087 -
Bda03g00256 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Bda03g00256 520 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 498 - -
Bda03g00256 520 MobiDBLite consensus disorder prediction 1 30 - -
Bda03g00256 520 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 9 498 - -
Bda03g00256 520 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Bda03g00256 520 Pfam Zinc-finger of C2H2 type 66 88 - -
Bda03g00256 520 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Bda03g00256 520 Gene3D Classic Zinc Finger 46 115 - -
Bda03g00256 520 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00256 Bda-Chr3:2288639 Bda10g00126 Bda-Chr10:3491616 8.64E-165 dispersed
Bda06g00859 Bda-Chr6:11818447 Bda03g00256 Bda-Chr3:2288639 4.47E-73 dispersed
Bda03g00256 Bda-Chr3:2288639 Bda10g00123 Bda-Chr10:3211502 7.00E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15626 PF12874 zf-met 0.0038 CL0361 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00256 K25869 - zju:107420256 558.14