Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00257 ATGGAGGTTGGTGAAAACAATTGGAACCTGCAAACAGTGACGGGAAGTCGCCCAGATTTGCTGAAGAAATCAGGGAATATTGAGGTGATGCATGATGTCCCGATGAAAAAGAATGTTTTTAGGCCATCTGTGTTTGATTTTGATGCTGATAGGCGCGACAAATGGCGTGACGAGGAAAGAGACACAAATTCTTCAATTCGCAAAGATCGTTGGAAGGATGGAGAAAAAGATTTGGCTGATAATCGGAGGGCAGATCGATGGATGGAAAATTCTTCCAATAGACATTTTGGCGAAGCTCGCCGTGCTCCATCTGATCGGCGTATAGACTCTAGTAACTTGGATAGTAATTTTGATCACCAGCGGGAAAGCAAATGGAATACTCGCTGGGGACCTGATGACAAAGAGCCTGAAGGCTTCCGTGAGAAGTGTGTAGGCTCCGAGAAAGATGGTGATATATTCCATGACAGAGGTTCCTCAAATGTGATAACTCATGAAAAAGATGATAGGGAGGGAAATCAGTACCGGCCATGGAGATCAGCTTCCTCTCAAAACAGAGGAAGGGGAGGACCTCATCATCAATCTGCACCAAGCAAACAAGTTTCTACAGTTGCCTATGGTAGAGGGCGTGGAGAAAATCCACCTCCAACTTTTCCAGTCAGTCACGGCAGGAGTGGTTCCACTGGAAGCTCTGTGAACCATTCTAATTCGATCCATTCTCTGCCATTCGGTTCTTCTGTGGAGAAATTGGAAGGTGTTCGCAGTGAGCCTTATCCATCAAGGTATGCAAGGAAGAAGTTACTTGATGTGTACAGAACAGCTGAAGAGAGATCATACCAAGTTATACCTGACGGATTTGTTCCTGTACCTTCTCTCACATTGGACGAACCATTACAACCTCTAGCACTTTGTGTACCAAATCCTGAGGAAATGATTGTTCTGAAGGAAATTGAAATAGGAGATGTTGTGAGTAGTGGTGCACCTCAAATATCAAGGGATGGACGAAACTCACTAGATATGGGGCAGTCAAGACGAAACAAGCTTGCTGTTACTAGAGAAGATTTCACTCAGGATCTTGATGAAACTAAAGCGGAAGGTTCTGATGGCACAAAGTTTAGTCAGATGAATTTCTCATATGGGCCTTCATATGAAAGACAAATGCTACATCATGGATCTCAATTGAAAATGGAAACCTCTCAAGATCGCAAGATTAATTCTGGAAATAAGCTCACAGCAGAAGAGAACTCTTGTTGCTACATGTCTGCAGGTTTCAGAGAAGATGGTAATTACACAAATACAGTTGGGCTTCCAAGCAACAGGGAATCAAGTTTTCATAAACATATACCAGTTAATCATGGGGCTACACAGCAAACCTTGTCACTTGGAGAAAACGCTCATCCATCTTTGCCTGACTGGAGAGACAATCCAACTGATGTCAGCTTTAGGACCCCTGAGAAGGGCTTGTTACAACCATCAAAAAATCTTACTCATGAATTAGGAAATAATTTAGCAAATCATACATACATCAAAGACAACATAAGAAATCAAATGAGCGAGGACCTTATTATTAGAAGGCAGCTATCTGGAATTTTGGGTGAGGAACTGCACTTAAGGAGACCTATACAGGTTTCTCCTGAGGATCTTAGGCTTTATTATCAAGATCCTTCTGGCGTTATTCAAGGTCCTTTTGCTGGGATAGATATCATTGGGTGGTTTGAAGCTGGATATTTTGGCCTGGATTTACTTGTTCGTCTGGAAAGTGCTCCAAGTGACTCACCTTTTTCTTTACTTGGGGACGTCATGCCCCATTTGCGAGCCAAAGCCAAGCCCCCGCCTGGTTTTGGTGGAACCAAGCAAATTGAAAATAGAGATGGTTCTCCTAATATAAGCTTCCATGGCTTTGCACAAAATCACTCTGGTTTGAGTGATGTGGAAATGGTGAGAAATGAGCCTAGGCTTAAACATAGCACAGCAACAGAAGCCGAAAATAGGTTTCTGGAGTCACTGATGTCTTCTAATTTAAGCAGTTCATCCCTTGGGAACTCTTTTTCAGAAGGTATGCAAGTACATTTTGGAAATACTTCTCATAATCTACCTGCAACCGGAGTAGATGTTGGAAATAATCTGCTCCTGATGGCTAAAAGAATGGCACTAGAAAGACAGAAGTCTTTACCTAATACACATCAGTATTGGCAAGGCAGAGATACTGCATCGATGGTGTCTAAATCCGATATTATTCAAGATTCCATAACACCACATTCAAAACTCCTAAACCCAATCTTGGACAATCCTCGCCAGACTCCATATTCCCAAAATGCTGACACCACGTCTATCCTTCAAGGCATGTCTGATGTACCATCATCTGGAATTAATAACCCTGCTGGTAGTTGGTCCAGTTTTACTAGCCAATCCGTGTCTGACGTACTTCAGAGTAAGATTGACATGCACCACGAGCAAAATTTCCCTCCTTCAGTGTCATTTGGGCTTCAGCAACAGAGGTTTCAACTTCAGAAGCAGCCATCTTTGACTAATCTACTTTCTCAAGCTATCGAAAATCCATCAGCGGTTTCAACACCAGACAAATTACTCTCATCAAATTTTCAAGAGCAACAGCTGTTAAACATTTTGCAGCAGCAACAAGTACTTTCCTCCAATTTAACACAAGATCCGAATGTGTTGAATATGTTGCAACAAAAATATCTCCTGCAACTACATTCTCAGGCACCTGTTCCCACTCAGCAGATGTCTTTGTTAGATAAACTGGTGTTGCTGAATCAGCAACAGAAACAGGAGGAAGAACAACAGCTATTACGGCATCAACAGTTACTCTCTCAGGTGCTATCTGAGCATCGATCCCACCAGTTCTTTGGAGATCCATCTTGTGGTCAGGGACATGCTTCTGCTGTGCCAATAAGAAATGCATTTACTGATCCCTCTCAGATTCAGCTATCACTGGAGATGCTTCGTAATGTTTCACAACTTCCTGTTGTGGACGTGCCAGGTGAGCATGTTAACGACGCTAGAAACATGCCTTTGCAAGTTACCCATGATGTCACTTTTAGTGTTAATGCGGAAGGTTCGTCCCTTTCAATTCCAAATCAAATACTTGGTACAACAACCCAACAGAGGGGCATGAGTGCTGCTCATTCAGGACAGGTGAATGATATGCCGGCTGCACTGAAAATTGTTGAGAACTCAACTTTACCCAATGTGATGAGCAGATCAACAGAGGATTCTGGTCTTTTGGAGAAGCATGTTTCTACTTCTGAAACTAATATTCCAAAAATGGCAGAGCAAGATACAGAACAAACTAGAGATATTTACAGAACTCTGACGAGTTTGACCTCCGAGACTGGTGTAGATTCAGAACTTCTTGAGAGTGCTGAAGTCTTTGGTTGTTTATCTTCAGAAGGAAAGAGTGAAGTTTCTGTTACTGACACTGCCTGTGAGACAAAGATGAAACTGAATAGTGTGTGTGAAAAGCAAGAGGTTGAGAGGGATTTCTGGGAAAATGAACCTTCAAAGCAAGAAGCAGAAAAAGTTGAAATACCTGAACCAAGAAAAGTTTCTGAAAAGAAATCGAAAAAGCAAAAATCTTTGAAGATACAACCCTCTTCTGATGAAGGGAAGGGAATAGGTAAAACCCCACAGCTTCCAAAGCACTCTGAAAGTGAAAAGCAGGAGTCTAGTGACTTGAAAGTGGAGTTAGACAAAGGTGCGGGGCAAACACTACTTCAACAGAGATCAGGAAATGAAAACAAAAAAATTGTGTCTTTGGAGGTTGTGGATTCTCAACAAAATCAAAGTTCAGTGTCTGAAAAGTTTTCTAGAGACAGCGGCGAAACAGTTGGAATCAAGAGTGACATGCTATGCAAGCAAGTACAGATTGGACCAAGAGCTTGGAAGCCTGCTCCTGGTTTCAAAGCAAAATCATTATTAGAAATTCAGGAGGAAGAACAGAAAAAGGCGCAGTCTGAAGCAGTGATATCTGAAATTGCTACTTCTTCTTGGACTGGAATTGTGAGCAATGTAGGAGAGACCCGAAAAGGTTCTGCGAGTCATGAAGCTTCTCTAAATTCAAAGAGTAAGAAAAGTCAGTTACACGACCTTTTGGCTGAAGAAGTTCCTTTGAAGTCTAGGAAAGGAGATAATGAGGTTTCTGATTCTCTTTTGAATTCATCTTCCATAATAGTAACATCCAAGCATTCAGATTCTATAGATGATGACAACTTTATTGAAGCTAAAGATACTAAAAAGAACCGCAAGAAGGCTGCAAAATCTAAGGGAGTTGGAACGAAGACCACGTCAACAGTTACTTCTGTTGATATTCCTACTGGATCAAGTCCAATAGAGAAAGTGAGAAGTTCTCTTCAAGTTCAGCAGGAAAAGGAAGTTATACCCGCAATTCCATCAGGGCCTTCCTTGAGTGATTTTGTTTCTTGGAAGGGAGAGTCAGGAAACTCATCCCCTACTCCAGCATGGTCTACTGAGCCAGGGAAGGTTTCTAAACCCACATCTTTAAGAGAAATTCAAAAGGAACAAGAAAGAAGGATCTCCTCCCAGCATCCATCCCAAATACCAACACCCCAGAAGTCCCAGCCAACTCAAATTTCCCACAATAATGCCGCTCAGAGGTCCCTTTCTGCATCATCTCCATCTAAGGCTGCATCTTCAATTTCCATCAATCCTCACCCATCTTCTCAGTCAAAAATTAAAGGGGATGAAGAATGGTTTTGGGGACCAATTGATCATTCGAAGCAAGAACAGCAGGTTGATTTTCCGCAACTTGCAACTCAGAGTAGTTGGGAAACAAGAGCTACTCCAGGAAAAGGAACTTCGGTTGGATCATTAAACAGACAAAGATCATTGACTGGCAAAGCTTCTGAGAGCTCTCTGTCTACCTCAACGTCTGTTCATTCATCCTCAAGAGGAAAGACAGACGCCAGGACCAAGCATTCAGAAGCCATGGACTTTAGAGATTGGTGCGAGAGTGAATGTGTTCGGCTCATTGGGTCGAAAGATACTAGTTTTCTTGAATTTTGCTTGAAGCAATCCAGAACAGAGGCTGAGGTGCTTTTGACAGAGAACCTTGAATCATATGATCCTGATCACGAGTTCATCGACAAATTCCTCAACTACAAGGAGTTGCTATCATCAGAAGTTCTTGAAATTGCGTTTCAGAATCAGAATGATTGGAGGGCAACTGGATTCAGTGGCAAAGACTTGAATTCTGACTATGCAAATTCAGGTGATGTTGATGACTACTCCACATCAAAGGGAGGAGGAAAAAAGAAGGCGAAGAAAGGGAAGAAGGTTAGTGCAGCTATTCTGGGTTTTAATGTTGTCAGTAACAGAATCATGATGGGTGAGATTCAGACAGTGGAAGATTAG 5388 42.17 MEVGENNWNLQTVTGSRPDLLKKSGNIEVMHDVPMKKNVFRPSVFDFDADRRDKWRDEERDTNSSIRKDRWKDGEKDLADNRRADRWMENSSNRHFGEARRAPSDRRIDSSNLDSNFDHQRESKWNTRWGPDDKEPEGFREKCVGSEKDGDIFHDRGSSNVITHEKDDREGNQYRPWRSASSQNRGRGGPHHQSAPSKQVSTVAYGRGRGENPPPTFPVSHGRSGSTGSSVNHSNSIHSLPFGSSVEKLEGVRSEPYPSRYARKKLLDVYRTAEERSYQVIPDGFVPVPSLTLDEPLQPLALCVPNPEEMIVLKEIEIGDVVSSGAPQISRDGRNSLDMGQSRRNKLAVTREDFTQDLDETKAEGSDGTKFSQMNFSYGPSYERQMLHHGSQLKMETSQDRKINSGNKLTAEENSCCYMSAGFREDGNYTNTVGLPSNRESSFHKHIPVNHGATQQTLSLGENAHPSLPDWRDNPTDVSFRTPEKGLLQPSKNLTHELGNNLANHTYIKDNIRNQMSEDLIIRRQLSGILGEELHLRRPIQVSPEDLRLYYQDPSGVIQGPFAGIDIIGWFEAGYFGLDLLVRLESAPSDSPFSLLGDVMPHLRAKAKPPPGFGGTKQIENRDGSPNISFHGFAQNHSGLSDVEMVRNEPRLKHSTATEAENRFLESLMSSNLSSSSLGNSFSEGMQVHFGNTSHNLPATGVDVGNNLLLMAKRMALERQKSLPNTHQYWQGRDTASMVSKSDIIQDSITPHSKLLNPILDNPRQTPYSQNADTTSILQGMSDVPSSGINNPAGSWSSFTSQSVSDVLQSKIDMHHEQNFPPSVSFGLQQQRFQLQKQPSLTNLLSQAIENPSAVSTPDKLLSSNFQEQQLLNILQQQQVLSSNLTQDPNVLNMLQQKYLLQLHSQAPVPTQQMSLLDKLVLLNQQQKQEEEQQLLRHQQLLSQVLSEHRSHQFFGDPSCGQGHASAVPIRNAFTDPSQIQLSLEMLRNVSQLPVVDVPGEHVNDARNMPLQVTHDVTFSVNAEGSSLSIPNQILGTTTQQRGMSAAHSGQVNDMPAALKIVENSTLPNVMSRSTEDSGLLEKHVSTSETNIPKMAEQDTEQTRDIYRTLTSLTSETGVDSELLESAEVFGCLSSEGKSEVSVTDTACETKMKLNSVCEKQEVERDFWENEPSKQEAEKVEIPEPRKVSEKKSKKQKSLKIQPSSDEGKGIGKTPQLPKHSESEKQESSDLKVELDKGAGQTLLQQRSGNENKKIVSLEVVDSQQNQSSVSEKFSRDSGETVGIKSDMLCKQVQIGPRAWKPAPGFKAKSLLEIQEEEQKKAQSEAVISEIATSSWTGIVSNVGETRKGSASHEASLNSKSKKSQLHDLLAEEVPLKSRKGDNEVSDSLLNSSSIIVTSKHSDSIDDDNFIEAKDTKKNRKKAAKSKGVGTKTTSTVTSVDIPTGSSPIEKVRSSLQVQQEKEVIPAIPSGPSLSDFVSWKGESGNSSPTPAWSTEPGKVSKPTSLREIQKEQERRISSQHPSQIPTPQKSQPTQISHNNAAQRSLSASSPSKAASSISINPHPSSQSKIKGDEEWFWGPIDHSKQEQQVDFPQLATQSSWETRATPGKGTSVGSLNRQRSLTGKASESSLSTSTSVHSSSRGKTDARTKHSEAMDFRDWCESECVRLIGSKDTSFLEFCLKQSRTEAEVLLTENLESYDPDHEFIDKFLNYKELLSSEVLEIAFQNQNDWRATGFSGKDLNSDYANSGDVDDYSTSKGGGKKKAKKGKKVSAAILGFNVVSNRIMMGEIQTVED 1795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2297998 2304956 - Bda016213.1 Bda03g00257 3516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1477 1501 - -
Bda03g00257 1795 PANTHER GYF DOMAIN-CONTAINING PROTEIN 880 1795 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1218 1234 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1165 1250 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1405 1419 - -
Bda03g00257 1795 Gene3D - 536 619 IPR035445 -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1587 1650 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1344 1387 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 175 201 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1365 1384 - -
Bda03g00257 1795 Pfam GYF domain 550 591 IPR003169 GO:0005515
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1405 1571 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 94 233 - -
Bda03g00257 1795 Coils Coil 928 948 - -
Bda03g00257 1795 SUPERFAMILY GYF domain 540 603 IPR035445 -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 94 174 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1165 1202 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1260 1279 - -
Bda03g00257 1795 CDD GYF 546 603 IPR003169 GO:0005515
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1587 1642 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1428 1461 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1519 1567 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 219 233 - -
Bda03g00257 1795 PANTHER GYF DOMAIN-CONTAINING PROTEIN 880 1795 - -
Bda03g00257 1795 PANTHER GYF DOMAIN-CONTAINING PROTEIN 3 880 - -
Bda03g00257 1795 ProSiteProfiles GYF domain profile. 546 597 IPR003169 GO:0005515
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1260 1276 - -
Bda03g00257 1795 MobiDBLite consensus disorder prediction 1344 1364 - -
Bda03g00257 1795 SMART gyf_5 547 602 IPR003169 GO:0005515
Bda03g00257 1795 PANTHER GYF DOMAIN-CONTAINING PROTEIN 3 880 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00257 - - - qsu:112038346 1550.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00536 Bda03g00257 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00537 Bda-Chr1:32322822 Bda03g00257 Bda-Chr3:2297998 1.31E-43 dispersed
Bda03g00257 Bda-Chr3:2297998 Bda13g00527 Bda-Chr13:6324077 5.50E-26 dispersed
Bda01g00536 Bda-Chr1:32315111 Bda03g00257 Bda-Chr3:2297998 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00257 Bda_Chr03 FPKM 0.462191 0.412018 0.0 0.0 0.280059 0.0 0.522971 0.655421 0.552736