Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00259 ATGGTGGAAGTGCGATGCTGTGAGTCGGAATTCTTTCTGATCTTGGTCGTGATAATTGGGTTGGTAACTTTCGCCGGATTAATGGCCGGACTTACTTTGGGTCTAATGTCTTTGGGTCTCGTCGACCTTGAGGTTCTGATCAAGTCCGGCAGACTTCGAGATCGGAAATACGCCGCAAAAATATTCCCTGTGGTAAAGAATCAGCATCTTCTTCTTTGTACGCTTTTGATTGGTAACTCTTTAGCAATGGAGACTCTTCCGATATTCTTGGATAAGATCGTCCCTTCATGGGCAGCTATTGTCATATCAGTCACATTAATCCTCATGTTTGGAGAGATCTTGCCTCAAGCTATCTGTACTCGATATGGACTTAAAGTTGGAGCACTAATGGCTCCATTTGTCCGTGTTCTTCTTATGCTTTTCTTCCCCATTTCCTATCCTATCAGTAAGGTTTTAGATTGGATGCTAGGAAAGGGCCACGCTGTCCTTTTAAGACGAGCGGAGCTTAAAACGTTTGTAAATTTTCATGGAAACGAGGCTGGTAAAGGTGGAGACTTAACACATGACGAGACTACAATCATAACTGGTGCGCTTGAATTGACTGAAAAAACAGCAAAAGATGCAATGACTCCTATATCAAATGCATTTTCCCTTGATCTTGATGCAGTTCTTGATTTGGAAACATTAAATGCAATCATGTCTAAAGGTCATAGTAGAGTTCCTGTTTATTCTGGAAATTCCGCCAATATAATTGGACTTGTTCTGGTTAAGAATCTCCTGTCCGTTGATCCAGATGATAAAATTGTCCTGAGAAAACTGATCATAAGAAAAATTCCTCGGGTGTCTGAAGGTATGCCGCTCTATGATATTCTAAACGAATTCCAGAAAGGGCACAGTCACATTGCTGTTGTGTTCAAAGATGTAAATAAGAAAAATGAAGCAACTAAGAAAGACAGAGACTCTGAAGAACATGGTTCTAAGGGCAATTACAAAAAACAGACCGACCAATCCGAGACTCTGTCTAAAAAAGCTTTGAGTGGAGGTCAACAGATGAAGAAAACTCCACCTGCCACTCCGGCTTATAGAAAACGACATAAAGGATGTTCATTTTGCATTTTGGATATCGAAAATGCTCCTATTCCAGAGTTCCCGTCTAATGAAGAGGTTGTTGGTGTAATTACCATGGAAGATGTTATAGAAGAACTGCTTCAGGAGGAGATCTTAGACGAAACTGATGAGTATGTGAATATCCACAACAGGTATAGTTTGAAAAATCCATAG 1281 40.52 MVEVRCCESEFFLILVVIIGLVTFAGLMAGLTLGLMSLGLVDLEVLIKSGRLRDRKYAAKIFPVVKNQHLLLCTLLIGNSLAMETLPIFLDKIVPSWAAIVISVTLILMFGEILPQAICTRYGLKVGALMAPFVRVLLMLFFPISYPISKVLDWMLGKGHAVLLRRAELKTFVNFHGNEAGKGGDLTHDETTIITGALELTEKTAKDAMTPISNAFSLDLDAVLDLETLNAIMSKGHSRVPVYSGNSANIIGLVLVKNLLSVDPDDKIVLRKLIIRKIPRVSEGMPLYDILNEFQKGHSHIAVVFKDVNKKNEATKKDRDSEEHGSKGNYKKQTDQSETLSKKALSGGQQMKKTPPATPAYRKRHKGCSFCILDIENAPIPEFPSNEEVVGVITMEDVIEELLQEEILDETDEYVNIHNRYSLKNP 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2312733 2315546 - Bda016215.1 Bda03g00259 3518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00259 426 CDD CBS_pair_CorC_HlyC_assoc 204 304 IPR044751 -
Bda03g00259 426 MobiDBLite consensus disorder prediction 313 362 - -
Bda03g00259 426 Pfam Cyclin M transmembrane N-terminal domain 17 188 IPR002550 -
Bda03g00259 426 Gene3D - 362 410 IPR046342 -
Bda03g00259 426 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 3 421 IPR045095 GO:0010960
Bda03g00259 426 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 3 421 - -
Bda03g00259 426 SUPERFAMILY CBS-domain pair 194 404 IPR046342 -
Bda03g00259 426 ProSiteProfiles CNNM transmembrane domain profile. 7 190 IPR002550 -
Bda03g00259 426 MobiDBLite consensus disorder prediction 313 331 - -
Bda03g00259 426 MobiDBLite consensus disorder prediction 332 353 - -
Bda03g00259 426 Gene3D - 188 326 IPR046342 -
Bda03g00259 426 ProSiteProfiles CBS domain profile. 209 270 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00259 K16302 CNNM; metal transporter CNNM - csv:101202791 623.624
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00530 Bda03g00259 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00259 Bda-Chr3:2312733 Bda15g00473 Bda-Chr15:7908185 5.53E-174 dispersed
Bda07g01901 Bda-Chr7:36392314 Bda03g00259 Bda-Chr3:2312733 2.24E-158 transposed
Bda01g00530 Bda-Chr1:32276691 Bda03g00259 Bda-Chr3:2312733 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g942 . Blo12g00909 Bda01g00530 Bda03g00259 Bpe02g00392 Bpe04g00212 Bma04g00208 Bma01g02320 . . Cma01g01908 . Car01g01490 . . . . . . . . . . . . . . . . . . . . Cone17ag1339 . Lsi04g01664 Csa03g04207 Chy04g00511 . . . . . . . . . . Cmo01g01971 . . . . . . Cpe02g00128 . . . . . . . Cla05g01942 Cam05g2085 Cec05g2098 Cco05g2152 Clacu05g2080 Cmu05g1955 Cre05g2075 . . . Cme04g00566
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009053 2 3 1 2 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00259 Bda_Chr03 FPKM 12.789934 14.0769 9.213327 10.550685 9.690897 10.13213 9.995042 9.285762 7.883209