Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda03g00263 | ATGCCACTGAAAAGCGTAGTTCGTGAAATTAGAGATAGCATTGGAAACTTGAGAAGAAAAGGGGAAGAAGGAAGGACATTACGTCGTCCAGGAAAATCTCATATTGCACCAGAACAGCCGCCATGTTCACCTTCTTCTTCTTCTTCAATTCCAGAGAGCCGATGGGCGAGTCTGCCCATCGAATTGTTTCTGGACATAATTCAAAGAGTAGAATCGAGCGAGACCTCCTGGCCTGGCAGGAGAGATGTTGTTGCCTGTGCTTCAGTTTGTAAATCATGGAGGGAGATTGCTAAAGGAGTTGTTAAAACCCCAGAGCAGTCTGGGTTGCTTACCTTTCCCATCTCCCTCAAACAGCCGGGACCAAGGGAGACTCCGATCCAGTGCTTTATAAAGAGGGAGAGTTCAACTTCAACCTATCTACTCTATCTCGGTCTCAGTCCTGCCCTGTCTGGCAACATGAGCAAGTTGTTACTAGCGGGAAAGAAGGTTAGATGGGCAACCCATACCGAATTTGTGATATCCTTAGTCGCCGATGATTTTTCTCGAGCAAGCAATACTTACATTGGAAAGTTAAGATCCAATTTCATGGGAACAAAGTTTTCAATCTATGACAGTCAGCCACCACAGGATCCAATTCTGCAAACAACTTGCAGGCCACATCGACGAATCCATTTAAAGCAGGTTTCTCCAAGAGTACCCATTGGAAACTATATAATTTCCTCCATACATTATGAGCTTAATGTCCTACGAACCCGAGGTCCGAGGAGAATGCAGTGCACAATGAACTCCATACCATTTTCATCCATTCTAGAAGGTGGCACAGCCCCTACTCCAACCGAATTCACAAATTGTCTCGATGAAAAACAAGATCTTCCATTGTCACTACCAAAGAAAAAGAAGCATCAAGTTGAGTTAAGCTCCGCAAGTCTATCTGAGCCTTTCCTCCCAATTCATTCTCCACTTGTTCTGAAGAATAAAGCTCCGAGATGGCATGAACAGCTCCAATGTTGGTGCCTGAATTTCAGAGGGCGTGTAACAGTCGCCTCTGTCAAGAATTTCCAGCTCGTGGCATCAGCTGATCTTCACCATAATATCTCCGAGACTGAACAAGAGAAAGTGATTCTGCAATTTGGTAAAATTGGAAAAGATATATTCACCATGGATTACCGATATCCGCTGTCAGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACTAAACCCGCCTGCGAATGA | 1242 | 44.77 | MPLKSVVREIRDSIGNLRRKGEEGRTLRRPGKSHIAPEQPPCSPSSSSSIPESRWASLPIELFLDIIQRVESSETSWPGRRDVVACASVCKSWREIAKGVVKTPEQSGLLTFPISLKQPGPRETPIQCFIKRESSTSTYLLYLGLSPALSGNMSKLLLAGKKVRWATHTEFVISLVADDFSRASNTYIGKLRSNFMGTKFSIYDSQPPQDPILQTTCRPHRRIHLKQVSPRVPIGNYIISSIHYELNVLRTRGPRRMQCTMNSIPFSSILEGGTAPTPTEFTNCLDEKQDLPLSLPKKKKHQVELSSASLSEPFLPIHSPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASADLHHNISETEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2336476 | 2338003 | - | Bda016219.1 | Bda03g00263 | 3522 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda03g00263 | 413 | MobiDBLite | consensus disorder prediction | 17 | 51 | - | - | |
Bda03g00263 | 413 | Gene3D | Tubby Protein; Chain A | 112 | 413 | IPR025659 | - | |
Bda03g00263 | 413 | ProSitePatterns | Tub family signature 2. | 398 | 413 | IPR018066 | - | |
Bda03g00263 | 413 | PANTHER | TUBBY-RELATED | 1 | 413 | - | - | |
Bda03g00263 | 413 | Gene3D | - | 49 | 100 | - | - | |
Bda03g00263 | 413 | ProSitePatterns | Tub family signature 1. | 341 | 354 | IPR018066 | - | |
Bda03g00263 | 413 | SUPERFAMILY | F-box domain | 40 | 97 | IPR036047 | GO:0005515 | |
Bda03g00263 | 413 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
Bda03g00263 | 413 | SUPERFAMILY | Tubby C-terminal domain-like | 104 | 413 | IPR025659 | - | |
Bda03g00263 | 413 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 413 | - | - | |
Bda03g00263 | 413 | Pfam | Tub family | 116 | 408 | IPR000007 | - | |
Bda03g00263 | 413 | PRINTS | Tubby superfamily signature | 370 | 389 | IPR000007 | - | |
Bda03g00263 | 413 | PRINTS | Tubby superfamily signature | 236 | 263 | IPR000007 | - | |
Bda03g00263 | 413 | PRINTS | Tubby superfamily signature | 391 | 413 | IPR000007 | - | |
Bda03g00263 | 413 | PRINTS | Tubby superfamily signature | 341 | 357 | IPR000007 | - | |
Bda03g00263 | 413 | PRINTS | Tubby superfamily signature | 323 | 340 | IPR000007 | - | |
Bda03g00263 | 413 | PRINTS | Tubby superfamily signature | 171 | 187 | IPR000007 | - | |
Bda03g00263 | 413 | PRINTS | Tubby superfamily signature | 187 | 211 | IPR000007 | - | |
Bda03g00263 | 413 | Pfam | F-box domain | 55 | 101 | IPR001810 | GO:0005515 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda01g00525 | Bda03g00263 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00462 | Bda-Chr1:31717422 | Bda03g00263 | Bda-Chr3:2336476 | 0 | dispersed | |
Bda03g00263 | Bda-Chr3:2336476 | Bda11g01863 | Bda-Chr11:53727722 | 0 | dispersed | |
Bda01g00525 | Bda-Chr1:32229193 | Bda03g00263 | Bda-Chr3:2336476 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15628 | PF01167 | Tub | 1.00E-103 | CL0395 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda03g00263 | K19600 | - | zju:107420271 | 623.624 |