Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00263 ATGCCACTGAAAAGCGTAGTTCGTGAAATTAGAGATAGCATTGGAAACTTGAGAAGAAAAGGGGAAGAAGGAAGGACATTACGTCGTCCAGGAAAATCTCATATTGCACCAGAACAGCCGCCATGTTCACCTTCTTCTTCTTCTTCAATTCCAGAGAGCCGATGGGCGAGTCTGCCCATCGAATTGTTTCTGGACATAATTCAAAGAGTAGAATCGAGCGAGACCTCCTGGCCTGGCAGGAGAGATGTTGTTGCCTGTGCTTCAGTTTGTAAATCATGGAGGGAGATTGCTAAAGGAGTTGTTAAAACCCCAGAGCAGTCTGGGTTGCTTACCTTTCCCATCTCCCTCAAACAGCCGGGACCAAGGGAGACTCCGATCCAGTGCTTTATAAAGAGGGAGAGTTCAACTTCAACCTATCTACTCTATCTCGGTCTCAGTCCTGCCCTGTCTGGCAACATGAGCAAGTTGTTACTAGCGGGAAAGAAGGTTAGATGGGCAACCCATACCGAATTTGTGATATCCTTAGTCGCCGATGATTTTTCTCGAGCAAGCAATACTTACATTGGAAAGTTAAGATCCAATTTCATGGGAACAAAGTTTTCAATCTATGACAGTCAGCCACCACAGGATCCAATTCTGCAAACAACTTGCAGGCCACATCGACGAATCCATTTAAAGCAGGTTTCTCCAAGAGTACCCATTGGAAACTATATAATTTCCTCCATACATTATGAGCTTAATGTCCTACGAACCCGAGGTCCGAGGAGAATGCAGTGCACAATGAACTCCATACCATTTTCATCCATTCTAGAAGGTGGCACAGCCCCTACTCCAACCGAATTCACAAATTGTCTCGATGAAAAACAAGATCTTCCATTGTCACTACCAAAGAAAAAGAAGCATCAAGTTGAGTTAAGCTCCGCAAGTCTATCTGAGCCTTTCCTCCCAATTCATTCTCCACTTGTTCTGAAGAATAAAGCTCCGAGATGGCATGAACAGCTCCAATGTTGGTGCCTGAATTTCAGAGGGCGTGTAACAGTCGCCTCTGTCAAGAATTTCCAGCTCGTGGCATCAGCTGATCTTCACCATAATATCTCCGAGACTGAACAAGAGAAAGTGATTCTGCAATTTGGTAAAATTGGAAAAGATATATTCACCATGGATTACCGATATCCGCTGTCAGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACTAAACCCGCCTGCGAATGA 1242 44.77 MPLKSVVREIRDSIGNLRRKGEEGRTLRRPGKSHIAPEQPPCSPSSSSSIPESRWASLPIELFLDIIQRVESSETSWPGRRDVVACASVCKSWREIAKGVVKTPEQSGLLTFPISLKQPGPRETPIQCFIKRESSTSTYLLYLGLSPALSGNMSKLLLAGKKVRWATHTEFVISLVADDFSRASNTYIGKLRSNFMGTKFSIYDSQPPQDPILQTTCRPHRRIHLKQVSPRVPIGNYIISSIHYELNVLRTRGPRRMQCTMNSIPFSSILEGGTAPTPTEFTNCLDEKQDLPLSLPKKKKHQVELSSASLSEPFLPIHSPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASADLHHNISETEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2336476 2338003 - Bda016219.1 Bda03g00263 3522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00263 413 MobiDBLite consensus disorder prediction 17 51 - -
Bda03g00263 413 Gene3D Tubby Protein; Chain A 112 413 IPR025659 -
Bda03g00263 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Bda03g00263 413 PANTHER TUBBY-RELATED 1 413 - -
Bda03g00263 413 Gene3D - 49 100 - -
Bda03g00263 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Bda03g00263 413 SUPERFAMILY F-box domain 40 97 IPR036047 GO:0005515
Bda03g00263 413 MobiDBLite consensus disorder prediction 17 32 - -
Bda03g00263 413 SUPERFAMILY Tubby C-terminal domain-like 104 413 IPR025659 -
Bda03g00263 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 413 - -
Bda03g00263 413 Pfam Tub family 116 408 IPR000007 -
Bda03g00263 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Bda03g00263 413 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Bda03g00263 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Bda03g00263 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Bda03g00263 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Bda03g00263 413 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Bda03g00263 413 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Bda03g00263 413 Pfam F-box domain 55 101 IPR001810 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00525 Bda03g00263 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00462 Bda-Chr1:31717422 Bda03g00263 Bda-Chr3:2336476 0 dispersed
Bda03g00263 Bda-Chr3:2336476 Bda11g01863 Bda-Chr11:53727722 0 dispersed
Bda01g00525 Bda-Chr1:32229193 Bda03g00263 Bda-Chr3:2336476 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15628 PF01167 Tub 1.00E-103 CL0395 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00263 K19600 - zju:107420271 623.624