Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00269 ATGGAAGTTGGGAGAATTCTTCATATGAGTAAAGGAAATGGGGAGACTAGCTATGCTCAAAACTCCACTGTTCAGAGCAAAATCATTACAATAGCAAATCCAGTGATAGTGGAAGCCATTGAAGGACTGTTGAGCAGATCTTTGCCGGAGATCATGGGGATAGCCGACTTAGGCTGCTCGTCTGGACCAAACACGTTAAACGCAGTGTCGGCGATTATGGACGTCGTGCATGAAAAATACAGAGGTCATGGGCGTTCACTGCCGGAGCTTAACGTGTTTCTCAATGATCTATATGGCAACGATTTCAACAATCTTTTCCAATTGTTACCAACTTTCCTCCATCAAATTGAGACAGAAAAAGGGGGAGAGTTTGCCAGAAAATGTGCCATTTTCGGTGCTCCTGGTTCTTTCTATGGAAGACTATTTCCGAGCAAGAGCCTCCATTTTGTTCACTCCTTTACCAGTCTCCATTGGCTATCTCAGGTTCCGCCATGTTTGGACAAAGAAGCAAAAGAAACGATGAACAAGGGAGCGATTTACATATCAAAGAAGAGTCCACCATGTGTGCTGGAAGCTTACGCGGAGCAATTTCATGAAGATTTCTCGGCGCTACTAAAATCACGTTCAGAAGAAATAGTCGAGGGAGGGAGAATGGTGTTGTCGTTCATGGGGAGGAAATCAAGGAACCCCACAGACGATATCTGCCGCCATTTTGAGATCTTAACGCAAGCCTTAATGAGTATGGTTTCAGAGGGACTAATCGATGAAGAAAAGGTTGACTGTTTCAACGTTCCATACTATGCTCCATGCAAAGAAGAAGTGGAAGTGGAGATAAAGAGAGAGGGTTCATTCATTTTGGATCTTCAAGAAGCTTTCGAAGTTGACTGGGACGGAGGAAGTATCGATGAAACAGTAAATGATCTTGCAACTCTATCGGGAGGACGACGAGTGGCAAAGATGATGCAAGCTGTTAACCAGTCCATGCTAGAGTCTCATTTTGGAGGAGAAATCATGGAAGAATTGTTCAAAAGATTTGAGGAAATCGTCCAAGATCATTTGGCAGGGACCTGTTTGAAGAAGATTAATCTGATTATTTCTCTCATAAGGAAATAA 1113 43.22 MEVGRILHMSKGNGETSYAQNSTVQSKIITIANPVIVEAIEGLLSRSLPEIMGIADLGCSSGPNTLNAVSAIMDVVHEKYRGHGRSLPELNVFLNDLYGNDFNNLFQLLPTFLHQIETEKGGEFARKCAIFGAPGSFYGRLFPSKSLHFVHSFTSLHWLSQVPPCLDKEAKETMNKGAIYISKKSPPCVLEAYAEQFHEDFSALLKSRSEEIVEGGRMVLSFMGRKSRNPTDDICRHFEILTQALMSMVSEGLIDEEKVDCFNVPYYAPCKEEVEVEIKREGSFILDLQEAFEVDWDGGSIDETVNDLATLSGGRRVAKMMQAVNQSMLESHFGGEIMEELFKRFEEIVQDHLAGTCLKKINLIISLIRK 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2361007 2363247 - Bda016225.1 Bda03g00269 3528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00269 370 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 4 368 IPR005299 GO:0008168
Bda03g00269 370 Gene3D - 6 354 IPR042086 -
Bda03g00269 370 Pfam SAM dependent carboxyl methyltransferase 40 369 IPR005299 GO:0008168
Bda03g00269 370 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 4 368 - -
Bda03g00269 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 370 IPR029063 -
Bda03g00269 370 Gene3D Vaccinia Virus protein VP39 21 295 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00269 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] - zju:107403688 441.425
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00269 Bda-Chr3:2361007 Bda14g00999 Bda-Chr14:8384469 7.98E-95 dispersed
Bda04g00039 Bda-Chr4:671426 Bda03g00269 Bda-Chr3:2361007 5.38E-104 transposed
Bda04g00238 Bda-Chr4:17736587 Bda03g00269 Bda-Chr3:2361007 9.73E-107 transposed
Bda07g00379 Bda-Chr7:4785101 Bda03g00269 Bda-Chr3:2361007 1.44E-61 transposed
Bda10g00474 Bda-Chr10:37827309 Bda03g00269 Bda-Chr3:2361007 4.97E-59 transposed
Bda14g00966 Bda-Chr14:7787993 Bda03g00269 Bda-Chr3:2361007 9.05E-109 transposed
Bda15g00505 Bda-Chr15:8137806 Bda03g00269 Bda-Chr3:2361007 6.90E-39 transposed
Bda01g00519 Bda-Chr1:32153947 Bda03g00269 Bda-Chr3:2361007 0 wgd
Bda14g00559 Bda-Chr14:4112844 Bda03g00269 Bda-Chr3:2361007 5.85E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g981 . Blo12g00901 . Bda03g00269 . . Bma04g00217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00482 . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01919 Cam05g2056 Cec05g2068 Cco05g2120 Clacu05g2050 Cmu05g1927 Cre05g2050 . . . Cme04g00536
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00269 Bda_Chr03 FPKM 3.449152 0.0 2.66804 0.0 3.940259 2.441346 3.313298 2.74665 2.73322