Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00272 ATGGGCCTGAATCAAGGCACTGCTCATGAATTCTACTCAACTGCCTCAATAGGGATGTCTCAATCTCCTTCCAACCGTGTAGAAGCTATGGAGGACAGATGCGAGATGGCGTTTATTCCAGAATTTGGAGATCCATTTGGCAGGCAGAATATTCAGGGTGGGGGGTTATCACTTAGCCTTGGCTCGAAGACACTTCTTTCTGCTGGAAATCAAAGTGCTATGGAAATGGAGTATTTTCCAAATTCTTCTAGCTTGGCCACCCTTGGTAAAATGAACTCCAATGTCTATGATCATCTTGAGGGTTCGGTTTTGGCTAGCACTGGCTTGGACTCCAAATATGTCAAGGCGGCTCAACAATTGCTCGATGAAGTTGTTAATGTTAGAGCAGCTTTGAATGAGTTAATATCTAATAAAAATAAAAGCTTTCTTTACAGCTCTAATGATAACATTGGCAGATCCAATGGTGGATCTTTAGATGTGTCTTGTGACGAGCTCTCGCCTGAAGAGCGACAAGACTTGAAGAACAAAAGTGCTAAGCTTTTGGCCATGGTTGAAGAGGTGGATGAAAGATATAGGCAATATTATCAACAAATGCAAATTATGGCTTCATCTTTCGACACAGTATCTGGTTGGGGGGCTGCAGAATTATATACAGCACTAGCCCATCAAACAATCTCACGCCATTTTCGCCGCTTACGAGATGGAATTAGCGATCAGATTCAGGTAATGAGAAGAAGGTTGGGAGAGGAAGATTGTTCATCAGGTAGCCAAAGAGGATTTCCTCGCCTACGCAATGTTGACCAGAAGCTCAGACAAGACAGGGCTCTTCAGCAACTTGGTCTTACCCGACATTCTTGGAGACCTCAAAGAGGGCTTCCTGAGAGCTCTGTCTCTATCCTTCGCGCTTGGCTGTTCGAACACTTCCTTCATCCATATCCAAAAGATTCTGAGAAGCTTATGTTAGCAAAGCAAACGGGATTGACACGACATCAGGTTGCCAACTGGTTCATAAATGCACGTGTGCGCCTCTGGAAACCCATGGTGGAGGAGATGTACAAAGAAGAGTTTGGCAATCCACAGACGGTCTTCAACTTTTCACCGGAAAACACTTCCAGAGCTCCCGAGGACATGGAAGAAGATTTGCAGGACGGCAGAATATCATCAAATGCTGACGGCGAGCAAATTCAGGAGCCAAAATCAAACGAAAATGATGAAAATGCAGAGAGTATTGCCAGTACTACTCTTTGCCCGCGTGAAATTATTTTGCCGAGCCAAGTCTCGCTTGCATTGGAGCTGAGGCATTGCGAAAGTAGCTCATTCTCAAAACCGGACGTTGTTCGTAATGCTGAAGATTCTCCTATTGGTAACTGCAGGTTAGGAAGCCCGCATCTACTGCATGATCTTGTTGGCCTTTAG 1416 44.84 MGLNQGTAHEFYSTASIGMSQSPSNRVEAMEDRCEMAFIPEFGDPFGRQNIQGGGLSLSLGSKTLLSAGNQSAMEMEYFPNSSSLATLGKMNSNVYDHLEGSVLASTGLDSKYVKAAQQLLDEVVNVRAALNELISNKNKSFLYSSNDNIGRSNGGSLDVSCDELSPEERQDLKNKSAKLLAMVEEVDERYRQYYQQMQIMASSFDTVSGWGAAELYTALAHQTISRHFRRLRDGISDQIQVMRRRLGEEDCSSGSQRGFPRLRNVDQKLRQDRALQQLGLTRHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLMLAKQTGLTRHQVANWFINARVRLWKPMVEEMYKEEFGNPQTVFNFSPENTSRAPEDMEEDLQDGRISSNADGEQIQEPKSNENDENAESIASTTLCPREIILPSQVSLALELRHCESSSFSKPDVVRNAEDSPIGNCRLGSPHLLHDLVGL 471
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 2397758 2399687 - Bda016229.1 Bda03g00272 3531
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00272 471 SUPERFAMILY Homeodomain-like 287 354 IPR009057 -
Bda03g00272 471 Pfam Associated with HOX 110 237 IPR006563 -
Bda03g00272 471 SMART HOX_1 286 350 IPR001356 GO:0003677
Bda03g00272 471 Coils Coil 170 190 - -
Bda03g00272 471 ProSiteProfiles 'Homeobox' domain profile. 283 346 IPR001356 GO:0003677
Bda03g00272 471 CDD homeodomain 286 347 IPR001356 GO:0003677
Bda03g00272 471 SMART prehox3 102 238 IPR006563 -
Bda03g00272 471 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 406 - -
Bda03g00272 471 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 75 406 - -
Bda03g00272 471 Pfam Homeobox KN domain 303 342 IPR008422 GO:0003677|GO:0006355
Bda03g00272 471 Gene3D - 282 359 - -
Bda03g00272 471 MobiDBLite consensus disorder prediction 361 408 - -
Bda03g00272 471 MobiDBLite consensus disorder prediction 372 386 - -
Bda03g00272 471 Coils Coil 117 137 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Bda01g01513 Bda03g00272 CCT
Bda01g01513 Bda03g00272 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00272 Bda-Chr3:2397758 Bda05g01130 Bda-Chr5:59513484 3.12E-88 dispersed
Bda01g01513 Bda-Chr1:50968677 Bda03g00272 Bda-Chr3:2397758 7.84E-73 wgd
Bda01g00515 Bda-Chr1:32123874 Bda03g00272 Bda-Chr3:2397758 0 wgd
Bda01g00423 Bda-Chr1:30787966 Bda03g00272 Bda-Chr3:2397758 8.37E-86 wgd
Bda03g00272 Bda-Chr3:2397758 Bda08g01259 Bda-Chr8:51315713 5.60E-74 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15629 PF07526 POX 4.70E-42 No_clan Bda TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00272 - - cmax:111494608 371.703