Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda03g00272 | ATGGGCCTGAATCAAGGCACTGCTCATGAATTCTACTCAACTGCCTCAATAGGGATGTCTCAATCTCCTTCCAACCGTGTAGAAGCTATGGAGGACAGATGCGAGATGGCGTTTATTCCAGAATTTGGAGATCCATTTGGCAGGCAGAATATTCAGGGTGGGGGGTTATCACTTAGCCTTGGCTCGAAGACACTTCTTTCTGCTGGAAATCAAAGTGCTATGGAAATGGAGTATTTTCCAAATTCTTCTAGCTTGGCCACCCTTGGTAAAATGAACTCCAATGTCTATGATCATCTTGAGGGTTCGGTTTTGGCTAGCACTGGCTTGGACTCCAAATATGTCAAGGCGGCTCAACAATTGCTCGATGAAGTTGTTAATGTTAGAGCAGCTTTGAATGAGTTAATATCTAATAAAAATAAAAGCTTTCTTTACAGCTCTAATGATAACATTGGCAGATCCAATGGTGGATCTTTAGATGTGTCTTGTGACGAGCTCTCGCCTGAAGAGCGACAAGACTTGAAGAACAAAAGTGCTAAGCTTTTGGCCATGGTTGAAGAGGTGGATGAAAGATATAGGCAATATTATCAACAAATGCAAATTATGGCTTCATCTTTCGACACAGTATCTGGTTGGGGGGCTGCAGAATTATATACAGCACTAGCCCATCAAACAATCTCACGCCATTTTCGCCGCTTACGAGATGGAATTAGCGATCAGATTCAGGTAATGAGAAGAAGGTTGGGAGAGGAAGATTGTTCATCAGGTAGCCAAAGAGGATTTCCTCGCCTACGCAATGTTGACCAGAAGCTCAGACAAGACAGGGCTCTTCAGCAACTTGGTCTTACCCGACATTCTTGGAGACCTCAAAGAGGGCTTCCTGAGAGCTCTGTCTCTATCCTTCGCGCTTGGCTGTTCGAACACTTCCTTCATCCATATCCAAAAGATTCTGAGAAGCTTATGTTAGCAAAGCAAACGGGATTGACACGACATCAGGTTGCCAACTGGTTCATAAATGCACGTGTGCGCCTCTGGAAACCCATGGTGGAGGAGATGTACAAAGAAGAGTTTGGCAATCCACAGACGGTCTTCAACTTTTCACCGGAAAACACTTCCAGAGCTCCCGAGGACATGGAAGAAGATTTGCAGGACGGCAGAATATCATCAAATGCTGACGGCGAGCAAATTCAGGAGCCAAAATCAAACGAAAATGATGAAAATGCAGAGAGTATTGCCAGTACTACTCTTTGCCCGCGTGAAATTATTTTGCCGAGCCAAGTCTCGCTTGCATTGGAGCTGAGGCATTGCGAAAGTAGCTCATTCTCAAAACCGGACGTTGTTCGTAATGCTGAAGATTCTCCTATTGGTAACTGCAGGTTAGGAAGCCCGCATCTACTGCATGATCTTGTTGGCCTTTAG | 1416 | 44.84 | MGLNQGTAHEFYSTASIGMSQSPSNRVEAMEDRCEMAFIPEFGDPFGRQNIQGGGLSLSLGSKTLLSAGNQSAMEMEYFPNSSSLATLGKMNSNVYDHLEGSVLASTGLDSKYVKAAQQLLDEVVNVRAALNELISNKNKSFLYSSNDNIGRSNGGSLDVSCDELSPEERQDLKNKSAKLLAMVEEVDERYRQYYQQMQIMASSFDTVSGWGAAELYTALAHQTISRHFRRLRDGISDQIQVMRRRLGEEDCSSGSQRGFPRLRNVDQKLRQDRALQQLGLTRHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLMLAKQTGLTRHQVANWFINARVRLWKPMVEEMYKEEFGNPQTVFNFSPENTSRAPEDMEEDLQDGRISSNADGEQIQEPKSNENDENAESIASTTLCPREIILPSQVSLALELRHCESSSFSKPDVVRNAEDSPIGNCRLGSPHLLHDLVGL | 471 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2397758 | 2399687 | - | Bda016229.1 | Bda03g00272 | 3531 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda03g00272 | 471 | SUPERFAMILY | Homeodomain-like | 287 | 354 | IPR009057 | - | |
| Bda03g00272 | 471 | Pfam | Associated with HOX | 110 | 237 | IPR006563 | - | |
| Bda03g00272 | 471 | SMART | HOX_1 | 286 | 350 | IPR001356 | GO:0003677 | |
| Bda03g00272 | 471 | Coils | Coil | 170 | 190 | - | - | |
| Bda03g00272 | 471 | ProSiteProfiles | 'Homeobox' domain profile. | 283 | 346 | IPR001356 | GO:0003677 | |
| Bda03g00272 | 471 | CDD | homeodomain | 286 | 347 | IPR001356 | GO:0003677 | |
| Bda03g00272 | 471 | SMART | prehox3 | 102 | 238 | IPR006563 | - | |
| Bda03g00272 | 471 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 75 | 406 | - | - | |
| Bda03g00272 | 471 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 10 | 75 | 406 | - | - | |
| Bda03g00272 | 471 | Pfam | Homeobox KN domain | 303 | 342 | IPR008422 | GO:0003677|GO:0006355 | |
| Bda03g00272 | 471 | Gene3D | - | 282 | 359 | - | - | |
| Bda03g00272 | 471 | MobiDBLite | consensus disorder prediction | 361 | 408 | - | - | |
| Bda03g00272 | 471 | MobiDBLite | consensus disorder prediction | 372 | 386 | - | - | |
| Bda03g00272 | 471 | Coils | Coil | 117 | 137 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda01g01513 | Bda03g00272 | CCT | |
| Bda01g01513 | Bda03g00272 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda03g00272 | Bda-Chr3:2397758 | Bda05g01130 | Bda-Chr5:59513484 | 3.12E-88 | dispersed | |
| Bda01g01513 | Bda-Chr1:50968677 | Bda03g00272 | Bda-Chr3:2397758 | 7.84E-73 | wgd | |
| Bda01g00515 | Bda-Chr1:32123874 | Bda03g00272 | Bda-Chr3:2397758 | 0 | wgd | |
| Bda01g00423 | Bda-Chr1:30787966 | Bda03g00272 | Bda-Chr3:2397758 | 8.37E-86 | wgd | |
| Bda03g00272 | Bda-Chr3:2397758 | Bda08g01259 | Bda-Chr8:51315713 | 5.60E-74 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 15629 | PF07526 | POX | 4.70E-42 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda03g00272 | - | - | cmax:111494608 | 371.703 |